Variant report

Variant	rs10268628
Chromosome Location	chr7:146262971-146262972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146259240..146261148-chr7:146262758..146264665,2	K562	blood:
2	chr7:146253504..146256343-chr7:146261873..146263479,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10216262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10236561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10236933	0.85[CEU][hapmap]
rs10243142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249436	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10262018	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs10262146	0.89[CEU][hapmap]
rs10262956	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10272562	1.00[CEU][hapmap]
rs10273967	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs10275587	0.89[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10280967	0.90[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10282256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10487930	0.85[CHB][hapmap]
rs10808039	0.89[CEU][hapmap]
rs12532419	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap]
rs168327	0.84[CHB][hapmap]
rs2098126	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2191295	0.82[CHB][hapmap]
rs2245916	0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs2693392	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2693394	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2693405	0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs344482	0.89[CEU][hapmap]
rs344488	0.89[CEU][hapmap];0.80[CHB][hapmap]
rs347181	0.89[CEU][hapmap]
rs347183	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs402278	0.89[CEU][hapmap]
rs4726793	1.00[CEU][hapmap]
rs6464768	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs6959655	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs725717	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7781022	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7789059	0.89[CEU][hapmap]
rs7810856	0.89[CEU][hapmap]
rs802008	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs802009	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs802012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs802013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs802019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9640229	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs971808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv608931	chr7:146189057-146274427	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv608934	chr7:146195452-146267257	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1028223	chr7:146226298-146267257	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1028701	chr7:146226298-146269716	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv608938	chr7:146227624-146264567	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	nsv1025948	chr7:146252115-146393151	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv948895	chr7:146260214-146348562	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146262800-146263200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:146262800-146263200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:146262800-146263200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:146262800-146263200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:146262800-146263400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:146262800-146263400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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