Variant report

Variant	rs10273967
Chromosome Location	chr7:146274427-146274428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10216262	0.89[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10232167	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10236561	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs10243142	0.89[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs10249254	0.89[CEU][hapmap];0.84[CHB][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap]
rs10249436	0.89[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10262018	0.89[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap]
rs10262956	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10268628	0.89[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs10272562	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10275587	0.89[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap]
rs10282256	0.89[CEU][hapmap];0.84[CHB][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap]
rs10487930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10808039	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap]
rs12532419	0.89[CHB][hapmap];0.86[CHD][hapmap]
rs168327	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs2098126	0.89[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2191295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2245916	0.93[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes]
rs2372763	0.85[CEU][hapmap]
rs2642496	0.86[CEU][hapmap]
rs2693392	0.89[CEU][hapmap]
rs2693394	0.87[ASW][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap]
rs2693405	0.84[CHB][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes]
rs344446	0.92[EUR][1000 genomes]
rs344482	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs344488	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs347181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs347183	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs347209	0.80[YRI][hapmap]
rs374882	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs402278	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4726793	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap]
rs6464768	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6959655	0.89[CEU][hapmap]
rs725717	0.84[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap]
rs7781022	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7789059	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs7810856	1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs802008	0.87[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap]
rs802009	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs802012	0.86[ASW][hapmap];0.88[CEU][hapmap];0.84[CHB][hapmap];0.86[GIH][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap]
rs802013	0.87[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.86[GIH][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs802019	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs9640229	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs971808	0.89[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv608931	chr7:146189057-146274427	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1032959	chr7:146193191-146351005	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv1025948	chr7:146252115-146393151	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv948895	chr7:146260214-146348562	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10273967	TPK1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links