Variant report
Variant | rs347181 |
---|---|
Chromosome Location | chr7:146294956-146294957 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10216262 | 0.89[CEU][hapmap];0.84[CHB][hapmap] |
rs10232167 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10236561 | 0.89[CEU][hapmap] |
rs10243142 | 0.89[CEU][hapmap] |
rs10249254 | 0.89[CEU][hapmap];0.87[TSI][hapmap] |
rs10249436 | 0.89[CEU][hapmap];0.84[CHB][hapmap] |
rs10262018 | 0.89[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap] |
rs10262146 | 0.86[CHD][hapmap] |
rs10262956 | 0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap] |
rs10268628 | 0.89[CEU][hapmap] |
rs10272562 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs10273967 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap] |
rs10275587 | 0.84[CHB][hapmap] |
rs10282256 | 0.89[CEU][hapmap];0.87[TSI][hapmap] |
rs10487930 | 0.95[CHB][hapmap];0.94[JPT][hapmap] |
rs10808039 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap] |
rs12532419 | 0.84[CHB][hapmap] |
rs168327 | 0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap] |
rs2098126 | 0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[YRI][hapmap] |
rs2191295 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap] |
rs2245916 | 0.86[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap] |
rs2372763 | 0.85[CEU][hapmap] |
rs2642496 | 0.86[CEU][hapmap] |
rs2693392 | 0.89[CEU][hapmap];0.84[YRI][hapmap] |
rs2693394 | 0.86[GIH][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap] |
rs2693405 | 0.86[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap] |
rs344446 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs344482 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs344488 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs347183 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap] |
rs374882 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs402278 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4726793 | 0.89[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap] |
rs6464768 | 0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
rs6959655 | 0.89[CEU][hapmap] |
rs725717 | 0.84[CEU][hapmap];0.84[CHB][hapmap] |
rs7781022 | 0.82[CEU][hapmap];0.83[CHB][hapmap];0.84[YRI][hapmap] |
rs7789059 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap] |
rs7810856 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs802008 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap] |
rs802009 | 1.00[CEU][hapmap] |
rs802012 | 0.88[CEU][hapmap];0.90[TSI][hapmap] |
rs802013 | 0.89[CEU][hapmap];0.84[MKK][hapmap];0.87[TSI][hapmap] |
rs802019 | 0.88[CEU][hapmap];0.84[YRI][hapmap] |
rs9640229 | 1.00[CEU][hapmap] |
rs971808 | 0.89[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1017138 | chr7:146102286-146318562 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1028798 | chr7:146138480-146318562 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv889391 | chr7:146168418-146389259 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1032959 | chr7:146193191-146351005 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1021967 | chr7:146199590-146413808 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1015996 | chr7:146202073-146419347 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
7 | nsv934014 | chr7:146212698-146400508 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
8 | nsv1022547 | chr7:146226298-146624409 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
9 | nsv996300 | chr7:146236230-146663300 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
10 | nsv1025948 | chr7:146252115-146393151 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | nsv948895 | chr7:146260214-146348562 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | esv2761376 | chr7:146287876-146334647 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
13 | nsv1018605 | chr7:146287876-146448400 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
14 | nsv889392 | chr7:146292088-146446767 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |