Variant report

Variant	rs10268753
Chromosome Location	chr7:139419888-139419889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139415110..139417997-chr7:139418401..139420501,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015121	0.91[EUR][1000 genomes]
rs10224408	0.94[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10230692	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254826	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10278124	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1106768	0.88[EUR][1000 genomes]
rs12155449	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs12374779	0.91[EUR][1000 genomes]
rs12374780	0.89[EUR][1000 genomes]
rs17177103	0.94[EUR][1000 genomes]
rs17177358	0.91[EUR][1000 genomes]
rs17177953	0.82[CEU][hapmap]
rs17262390	0.91[EUR][1000 genomes]
rs17262662	0.90[EUR][1000 genomes]
rs17262676	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs4074826	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4074827	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56079671	0.81[EUR][1000 genomes]
rs56840127	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61054086	0.91[EUR][1000 genomes]
rs6967634	0.94[EUR][1000 genomes]
rs73158611	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73158613	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73158614	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73158616	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740818	0.92[EUR][1000 genomes]
rs7456421	0.81[CEU][hapmap]
rs7787807	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7793114	0.94[EUR][1000 genomes]
rs7798740	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1801056	chr7:139419476-139427361	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139407600-139420000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:139409800-139420000	Weak transcription	Small Intestine	intestine
3	chr7:139412400-139420000	Weak transcription	Psoas Muscle	Psoas
4	chr7:139414600-139437600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:139414800-139426600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:139415000-139420000	Weak transcription	Right Atrium	heart
7	chr7:139415600-139420600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:139416000-139425000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:139416200-139420200	Weak transcription	Hela-S3	cervix
10	chr7:139416200-139425000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:139416200-139431600	Weak transcription	Fetal Brain Male	brain
12	chr7:139416400-139420200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:139416400-139420400	Weak transcription	NHDF-Ad	bronchial
14	chr7:139416600-139420000	Weak transcription	Aorta	Aorta
15	chr7:139416600-139420000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:139416600-139420000	Weak transcription	K562	blood
17	chr7:139416600-139420200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:139416600-139420200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:139416600-139420800	Weak transcription	Colonic Mucosa	Colon
20	chr7:139416600-139420800	Weak transcription	Placenta	Placenta
21	chr7:139416600-139421600	Weak transcription	Fetal Kidney	kidney
22	chr7:139416600-139424800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:139416600-139424800	Weak transcription	HMEC	breast
24	chr7:139416600-139425000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:139416600-139426600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:139416600-139431000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:139416600-139432000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:139416800-139420000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:139416800-139420000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:139416800-139420000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:139416800-139420000	Weak transcription	Liver	Liver
32	chr7:139416800-139420000	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:139416800-139420000	Weak transcription	Gastric	stomach
34	chr7:139416800-139420000	Weak transcription	Lung	lung
35	chr7:139416800-139420200	Weak transcription	Fetal Heart	heart
36	chr7:139416800-139420200	Weak transcription	HSMMtube	muscle
37	chr7:139416800-139420400	Weak transcription	Fetal Lung	lung
38	chr7:139416800-139420600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:139416800-139420600	Weak transcription	NHLF	lung
40	chr7:139416800-139421000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:139416800-139421600	Weak transcription	Fetal Thymus	thymus
42	chr7:139416800-139423200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr7:139416800-139424800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:139416800-139424800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:139416800-139425000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:139416800-139425000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:139416800-139425000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:139416800-139426600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:139416800-139426600	Weak transcription	Esophagus	oesophagus
50	chr7:139416800-139427200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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