Variant report

Variant	rs10278124
Chromosome Location	chr7:139416939-139416940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139415110..139417997-chr7:139418401..139420501,2	MCF-7	breast:
2	chr7:139414543..139416959-chr7:139476449..139479049,2	MCF-7	breast:
3	chr7:139408971..139413688-chr7:139413768..139417072,5	K562	blood:

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction
ENSG00000064393	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015121	0.91[EUR][1000 genomes]
rs10224408	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10254826	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10268753	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1106768	0.88[EUR][1000 genomes]
rs12155449	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs12374779	0.91[EUR][1000 genomes]
rs12374780	0.89[EUR][1000 genomes]
rs17177103	0.94[EUR][1000 genomes]
rs17177358	0.91[EUR][1000 genomes]
rs17177953	0.82[CEU][hapmap]
rs17262390	0.91[EUR][1000 genomes]
rs17262662	0.90[EUR][1000 genomes]
rs17262676	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs4074826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56079671	0.81[EUR][1000 genomes]
rs56840127	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61054086	0.91[EUR][1000 genomes]
rs6967634	0.94[EUR][1000 genomes]
rs73158611	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158613	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73158614	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73158616	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740818	0.92[EUR][1000 genomes]
rs7456421	0.81[CEU][hapmap]
rs7787807	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793114	0.94[EUR][1000 genomes]
rs7798740	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139404400-139417000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:139404600-139417400	Strong transcription	Primary T cells from cord blood	blood
3	chr7:139407600-139420000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:139409800-139420000	Weak transcription	Small Intestine	intestine
5	chr7:139411600-139417000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:139411600-139417200	Strong transcription	Stomach Smooth Muscle	stomach
7	chr7:139411600-139417400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:139411600-139417400	Strong transcription	HSMM	muscle
9	chr7:139411600-139417600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:139411800-139417200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:139411800-139417400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:139412000-139417000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr7:139412400-139417000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:139412400-139420000	Weak transcription	Psoas Muscle	Psoas
15	chr7:139412600-139417400	Strong transcription	Fetal Intestine Large	intestine
16	chr7:139412600-139417400	Strong transcription	Fetal Intestine Small	intestine
17	chr7:139413000-139417000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:139413000-139417000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:139413200-139417000	Strong transcription	HepG2	liver
20	chr7:139413200-139417000	Strong transcription	Osteobl	bone
21	chr7:139413200-139417400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr7:139413400-139417000	Strong transcription	Thymus	Thymus
23	chr7:139413400-139417400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:139413400-139417400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:139413600-139417000	Strong transcription	Fetal Brain Female	brain
26	chr7:139413600-139417400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:139413800-139417000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:139413800-139417200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr7:139414000-139417200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:139414200-139417400	Strong transcription	Pancreas	Pancrea
31	chr7:139414400-139417000	Strong transcription	Fetal Stomach	stomach
32	chr7:139414400-139417000	Strong transcription	Ovary	ovary
33	chr7:139414400-139417400	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr7:139414400-139417400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:139414600-139417000	Strong transcription	A549	lung
36	chr7:139414600-139417400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:139414600-139417400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:139414600-139417400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:139414600-139418600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:139414600-139437600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:139414800-139417000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:139414800-139417400	Strong transcription	NHEK	skin
43	chr7:139414800-139418200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:139414800-139426600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:139415000-139417000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr7:139415000-139417000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:139415000-139417000	Strong transcription	HUVEC	blood vessel
48	chr7:139415000-139417200	Strong transcription	NH-A	brain
49	chr7:139415000-139417400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr7:139415000-139420000	Weak transcription	Right Atrium	heart

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