Variant report

Variant	rs7798740
Chromosome Location	chr7:139462162-139462163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139457816..139459863-chr7:139461788..139463702,2	MCF-7	breast:
2	chr7:139452434..139456811-chr7:139460763..139464163,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1015121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224408	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs10230692	0.89[EUR][1000 genomes]
rs10254826	0.95[EUR][1000 genomes]
rs10268753	0.89[EUR][1000 genomes]
rs10278124	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs1106768	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12374780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177103	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177953	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs17262390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17262662	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17262676	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074826	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs4074827	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs55826011	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56079671	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56840127	0.91[EUR][1000 genomes]
rs61054086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967634	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158611	0.95[EUR][1000 genomes]
rs73158613	0.95[EUR][1000 genomes]
rs73158614	0.95[EUR][1000 genomes]
rs73158616	0.94[EUR][1000 genomes]
rs73735624	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs740818	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787807	0.95[EUR][1000 genomes]
rs7793114	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139432800-139469800	Weak transcription	Hela-S3	cervix
2	chr7:139438400-139462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:139438400-139467000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:139438600-139462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:139438800-139466200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:139439000-139462800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:139440600-139474600	Weak transcription	Fetal Brain Male	brain
8	chr7:139444000-139466000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:139444600-139462600	Weak transcription	NHEK	skin
10	chr7:139445800-139466000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:139446600-139475800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:139446600-139476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:139446800-139476400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:139448400-139465400	Weak transcription	Primary B cells from cord blood	blood
15	chr7:139449200-139466600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:139451400-139466000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:139453200-139466800	Weak transcription	Thymus	Thymus
18	chr7:139453600-139462400	Weak transcription	Fetal Kidney	kidney
19	chr7:139453600-139467600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:139453800-139462400	Weak transcription	NHDF-Ad	bronchial
21	chr7:139453800-139462600	Weak transcription	Spleen	Spleen
22	chr7:139453800-139462600	Weak transcription	NH-A	brain
23	chr7:139454000-139462600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:139454000-139462800	Weak transcription	Placenta	Placenta
25	chr7:139454000-139467600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:139454200-139462600	Weak transcription	HSMMtube	muscle
27	chr7:139454200-139463000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:139454200-139471000	Weak transcription	Brain Germinal Matrix	brain
29	chr7:139454200-139474000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:139454400-139462600	Weak transcription	Ovary	ovary
31	chr7:139454400-139462800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:139455000-139462600	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:139455000-139462800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:139455000-139462800	Weak transcription	Fetal Stomach	stomach
35	chr7:139455000-139462800	Weak transcription	K562	blood
36	chr7:139455000-139466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:139455000-139466800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:139455000-139475000	Weak transcription	Fetal Intestine Small	intestine
39	chr7:139455200-139473400	Weak transcription	Fetal Brain Female	brain
40	chr7:139455400-139462600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:139455600-139462600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:139455600-139462600	Weak transcription	Fetal Thymus	thymus
43	chr7:139455600-139462800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr7:139455600-139466000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:139455600-139466600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr7:139457400-139462600	Weak transcription	Stomach Mucosa	stomach
47	chr7:139457600-139462200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:139458200-139471400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:139458400-139463000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:139458600-139462200	Weak transcription	Gastric	stomach

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