Variant report

Variant	rs10268808
Chromosome Location	chr7:103023537-103023538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10257369	0.87[CEU][hapmap]
rs10266523	0.87[CEU][hapmap]
rs11978339	0.88[CEU][hapmap]
rs17136078	0.81[CEU][hapmap]
rs17136728	0.94[CEU][hapmap]
rs2878	0.87[CEU][hapmap]
rs4351346	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4593456	0.81[CEU][hapmap]
rs4727563	0.81[CEU][hapmap]
rs4729887	0.81[CEU][hapmap]
rs4729896	0.81[CEU][hapmap]
rs62482413	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62482415	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62638824	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971734	0.87[CEU][hapmap]
rs7455141	0.81[CEU][hapmap]
rs7777733	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3334511	chr7:103019816-103023814	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3430749	chr7:103020016-103023614	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10268808	RP11-401L13.5	cis	Thyroid	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
2	chr7:103021400-103027400	Weak transcription	Stomach Mucosa	stomach
3	chr7:103021600-103023800	Weak transcription	Fetal Heart	heart
4	chr7:103021600-103027600	Weak transcription	HepG2	liver
5	chr7:103022600-103024000	Enhancers	K562	blood
6	chr7:103022600-103033200	Weak transcription	Gastric	stomach
7	chr7:103023200-103023800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links