Variant report

Variant	rs10269297
Chromosome Location	chr7:146040931-146040932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10225925	1.00[CHB][hapmap]
rs10227977	1.00[CHB][hapmap]
rs10231549	1.00[CHB][hapmap]
rs10231672	1.00[CHB][hapmap]
rs10235457	1.00[CHB][hapmap]
rs10237250	1.00[CHB][hapmap]
rs10242387	1.00[CHB][hapmap]
rs10245855	1.00[CHB][hapmap]
rs10246857	1.00[CHB][hapmap]
rs10248899	1.00[CHB][hapmap]
rs10249269	1.00[CHB][hapmap]
rs10258224	1.00[CHB][hapmap]
rs10260495	1.00[CHB][hapmap]
rs10275558	1.00[CHB][hapmap]
rs10280011	1.00[CHB][hapmap]
rs10487935	1.00[CHB][hapmap]
rs11977983	1.00[CHB][hapmap]
rs11978155	1.00[CHB][hapmap]
rs11980503	1.00[CHB][hapmap]
rs12113340	1.00[CHB][hapmap]
rs1358079	1.00[CHB][hapmap]
rs1358083	1.00[CHB][hapmap]
rs1639456	1.00[CHB][hapmap]
rs1639489	1.00[CHB][hapmap]
rs17170042	1.00[CHB][hapmap]
rs17170050	1.00[CHB][hapmap]
rs17170051	1.00[CHB][hapmap]
rs17170055	1.00[CHB][hapmap]
rs17170058	1.00[CHB][hapmap]
rs17170073	1.00[CHB][hapmap]
rs1718075	1.00[CHB][hapmap]
rs1718077	1.00[CHB][hapmap]
rs1718078	1.00[CHB][hapmap]
rs1724526	1.00[CHB][hapmap]
rs1724527	1.00[CHB][hapmap]
rs1724535	1.00[CHB][hapmap]
rs1860683	1.00[CHB][hapmap]
rs7778058	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933136	chr7:145995920-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889388	chr7:145998111-146082957	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv934010	chr7:146006146-146076835	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv933530	chr7:146016273-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv608929	chr7:146020936-146082957	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv608930	chr7:146025509-146081452	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv971189	chr7:146037836-146042438	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146040400-146041600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:146040400-146041600	Weak transcription	Fetal Brain Male	brain
3	chr7:146040800-146041200	Weak transcription	Fetal Brain Female	brain

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