Variant report

Variant	rs1639456
Chromosome Location	chr7:146142764-146142765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10225925	1.00[CHB][hapmap]
rs10227977	1.00[CHB][hapmap]
rs10231549	1.00[CHB][hapmap]
rs10231672	1.00[CHB][hapmap]
rs10235457	1.00[CHB][hapmap]
rs10237250	1.00[CHB][hapmap]
rs10242387	1.00[CHB][hapmap]
rs10245855	1.00[CHB][hapmap]
rs10246857	1.00[CHB][hapmap]
rs10248899	1.00[CHB][hapmap]
rs10249269	1.00[CHB][hapmap]
rs10258224	1.00[CHB][hapmap]
rs10260495	1.00[CHB][hapmap]
rs10269297	1.00[CHB][hapmap]
rs10275558	1.00[CHB][hapmap]
rs10280011	1.00[CHB][hapmap]
rs10487935	1.00[CHB][hapmap]
rs11977983	1.00[CHB][hapmap]
rs11978155	1.00[CHB][hapmap]
rs11980503	1.00[CHB][hapmap]
rs12113340	1.00[CHB][hapmap]
rs1358077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1358079	1.00[CHB][hapmap]
rs1358083	1.00[CHB][hapmap]
rs1405170	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1405171	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1526153	0.86[YRI][hapmap]
rs1526155	0.85[YRI][hapmap]
rs1526160	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1526161	0.85[YRI][hapmap]
rs1626345	0.86[YRI][hapmap]
rs1631820	1.00[EUR][1000 genomes]
rs1639436	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639439	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639441	0.85[YRI][hapmap]
rs1639442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639457	0.92[YRI][hapmap]
rs1639459	0.81[YRI][hapmap]
rs1639461	0.85[YRI][hapmap]
rs1639463	0.85[YRI][hapmap]
rs1639489	1.00[CHB][hapmap]
rs1639497	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639500	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639503	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1639508	0.84[YRI][hapmap]
rs17170042	1.00[CHB][hapmap]
rs17170050	1.00[CHB][hapmap]
rs17170051	1.00[CHB][hapmap]
rs17170055	1.00[CHB][hapmap]
rs17170058	1.00[CHB][hapmap]
rs17170073	1.00[CHB][hapmap]
rs1718072	1.00[EUR][1000 genomes]
rs1718075	1.00[CHB][hapmap]
rs1718077	1.00[CHB][hapmap]
rs1718078	1.00[CHB][hapmap]
rs1718085	0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718087	0.85[YRI][hapmap]
rs1718094	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718095	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1718098	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724477	0.85[YRI][hapmap]
rs1724480	0.85[YRI][hapmap]
rs1724488	0.84[YRI][hapmap]
rs1724489	0.86[YRI][hapmap]
rs1724493	0.84[YRI][hapmap]
rs1724499	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724501	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724502	0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724503	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724504	1.00[EUR][1000 genomes]
rs1724505	1.00[EUR][1000 genomes]
rs1724514	0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724518	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724519	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724520	0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724521	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724522	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724524	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1724526	1.00[CHB][hapmap]
rs1724527	1.00[CHB][hapmap]
rs1724535	1.00[CHB][hapmap]
rs1860683	1.00[CHB][hapmap]
rs2535751	0.86[YRI][hapmap]
rs2693421	0.92[YRI][hapmap]
rs6947836	1.00[EUR][1000 genomes]
rs6969042	1.00[EUR][1000 genomes]
rs7778058	1.00[CHB][hapmap]
rs7804084	1.00[EUR][1000 genomes]
rs802193	1.00[EUR][1000 genomes]
rs802197	1.00[EUR][1000 genomes]
rs802199	1.00[EUR][1000 genomes]
rs802201	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802202	0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802204	0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940958	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940959	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940960	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940961	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940962	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940963	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv5994	chr7:146131977-146151284	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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