Variant report

Variant	rs1026995
Chromosome Location	chr4:81576814-81576815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10033769	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10033787	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12510415	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13111449	0.85[AFR][1000 genomes]
rs13136169	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1352076	0.81[EUR][1000 genomes]
rs1385890	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1486022	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1905967	0.83[EUR][1000 genomes]
rs28493682	0.81[AFR][1000 genomes]
rs2867781	0.81[EUR][1000 genomes]
rs2867784	0.96[ASN][1000 genomes]
rs2903671	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs329401	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693537	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6845517	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7658613	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1026995	C4orf22	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81576400-81577200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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