Variant report

Variant	rs329401
Chromosome Location	chr4:81629798-81629799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10033769	0.84[EUR][1000 genomes]
rs10033787	0.85[EUR][1000 genomes]
rs1026995	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12510415	0.81[EUR][1000 genomes]
rs13136169	0.85[EUR][1000 genomes]
rs1352076	0.81[EUR][1000 genomes]
rs1385890	0.81[EUR][1000 genomes]
rs1486022	0.82[EUR][1000 genomes]
rs1905967	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2867781	0.81[EUR][1000 genomes]
rs2903671	0.81[EUR][1000 genomes]
rs4693537	0.82[EUR][1000 genomes]
rs6845517	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7658613	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81624600-81630600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:81625200-81634400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:81626800-81634200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:81627400-81633000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:81629000-81630400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:81629000-81631400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr4:81629200-81631600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:81629200-81632200	Enhancers	Primary T cells from cord blood	blood
9	chr4:81629400-81631400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr4:81629600-81630600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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