Variant report

Variant	rs10271590
Chromosome Location	chr7:128153839-128153840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10230632	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10230965	0.82[ASN][1000 genomes]
rs10232401	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10243297	0.82[ASN][1000 genomes]
rs10245559	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10246093	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10251475	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10251597	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12386692	0.82[ASN][1000 genomes]
rs1560214	0.85[ASN][1000 genomes]
rs2562730	0.85[ASN][1000 genomes]
rs2562734	0.85[ASN][1000 genomes]
rs2562737	0.82[ASN][1000 genomes]
rs2562740	0.89[ASN][1000 genomes]
rs2732394	0.85[ASN][1000 genomes]
rs2732432	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28479078	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28670000	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28788212	0.82[AFR][1000 genomes]
rs3097361	0.89[ASN][1000 genomes]
rs35586323	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3958071	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4728108	0.85[ASN][1000 genomes]
rs4731455	0.82[ASN][1000 genomes]
rs5009156	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979384	1.00[ASN][1000 genomes]
rs6467178	0.85[ASN][1000 genomes]
rs6947697	0.82[ASN][1000 genomes]
rs6971024	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73463166	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7797240	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:128152600-128154800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:128153000-128154600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:128153200-128163200	Weak transcription	K562	blood

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