Variant report

Variant	rs2562737
Chromosome Location	chr7:128127355-128127356
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10229016	0.85[AMR][1000 genomes]
rs10229394	0.94[CEU][hapmap];0.87[AMR][1000 genomes]
rs10230632	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10230965	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10245559	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10251597	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10271590	0.82[ASN][1000 genomes]
rs1065267	0.84[CEU][hapmap]
rs11770116	1.00[CHB][hapmap]
rs11980741	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12672625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13245629	1.00[JPT][hapmap]
rs1560214	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2288548	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs2288549	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2402895	0.87[AMR][1000 genomes]
rs2562730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2562731	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2562732	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2562733	1.00[JPT][hapmap]
rs2562734	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2562740	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2732394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732397	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2732429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs2732432	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28479078	0.82[ASN][1000 genomes]
rs3097361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35586323	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3958071	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4728108	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4731446	0.87[AMR][1000 genomes]
rs4731448	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731450	0.85[AMR][1000 genomes]
rs4731453	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs4731454	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs4731455	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5009156	0.82[ASN][1000 genomes]
rs58979384	0.82[ASN][1000 genomes]
rs6467178	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6947697	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6948333	0.84[AMR][1000 genomes]
rs6959839	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7797240	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv966883	chr7:128107081-128142581	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117400-128136000	Weak transcription	Aorta	Aorta
2	chr7:128117600-128128400	Weak transcription	Left Ventricle	heart
3	chr7:128117600-128134000	Weak transcription	Ovary	ovary
4	chr7:128117600-128135800	Weak transcription	Esophagus	oesophagus
5	chr7:128117800-128128400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:128117800-128133600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:128117800-128133800	Weak transcription	Thymus	Thymus
8	chr7:128117800-128134600	Weak transcription	Gastric	stomach
9	chr7:128117800-128135800	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:128117800-128136200	Weak transcription	Stomach Mucosa	stomach
11	chr7:128117800-128137200	Weak transcription	Brain Angular Gyrus	brain
12	chr7:128117800-128137200	Weak transcription	Brain Substantia Nigra	brain
13	chr7:128117800-128140000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:128117800-128140800	Weak transcription	Psoas Muscle	Psoas
15	chr7:128117800-128141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:128117800-128142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
18	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:128118000-128128400	Weak transcription	Brain Germinal Matrix	brain
20	chr7:128118000-128128400	Weak transcription	Fetal Heart	heart
21	chr7:128118000-128133800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:128118000-128135600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:128118000-128136000	Weak transcription	Small Intestine	intestine
24	chr7:128118000-128136600	Weak transcription	Right Ventricle	heart
25	chr7:128118000-128137200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:128118000-128137200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:128118000-128137400	Weak transcription	NHLF	lung
28	chr7:128118000-128137800	Weak transcription	Fetal Kidney	kidney
29	chr7:128118000-128139800	Weak transcription	HSMM	muscle
30	chr7:128118000-128141000	Weak transcription	Colonic Mucosa	Colon
31	chr7:128118000-128141800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:128118000-128146400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:128118000-128146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:128118200-128146400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:128118400-128134000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr7:128118400-128134000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:128118400-128147000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:128119000-128130400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:128119200-128128200	Weak transcription	HepG2	liver
40	chr7:128119200-128141400	Weak transcription	HUVEC	blood vessel
41	chr7:128119600-128142000	Weak transcription	Fetal Brain Male	brain
42	chr7:128120000-128134200	Weak transcription	Fetal Lung	lung
43	chr7:128120000-128137200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:128120000-128139200	Weak transcription	GM12878-XiMat	blood
45	chr7:128120800-128129600	Strong transcription	Fetal Stomach	stomach
46	chr7:128120800-128136400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:128121400-128133800	Weak transcription	Primary B cells from cord blood	blood
48	chr7:128121400-128133800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:128121400-128147000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:128121600-128134000	Weak transcription	Spleen	Spleen

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