Variant report

Variant	rs4731455
Chromosome Location	chr7:128085864-128085865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:128085851-128086070	K562	blood:	n/a	chr7:128085949-128085960

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:128066861..128069656-chr7:128084982..128087017,2	MCF-7	breast:
2	chr7:128071934..128079559-chr7:128081793..128086197,10	MCF-7	breast:
3	chr7:128082541..128090035-chr7:128090151..128101015,22	MCF-7	breast:
4	chr7:128081121..128082834-chr7:128084423..128086408,3	K562	blood:
5	chr7:128083686..128086427-chr7:128093165..128095584,3	K562	blood:
6	chr7:128080630..128083451-chr7:128085283..128088252,3	MCF-7	breast:

No data

Variant related genes	Relation type
RNU7-54P	TF binding region
ENSG00000273184	Chromatin interaction
ENSG00000240758	Chromatin interaction
ENSG00000228700	Chromatin interaction
ENSG00000135245	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10229016	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10229394	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10230632	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10245559	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10271590	0.82[ASN][1000 genomes]
rs11980741	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1560214	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2288548	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2288549	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2402895	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2562730	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562732	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2562734	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562737	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2562740	0.85[ASN][1000 genomes]
rs2732394	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2732397	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732432	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28479078	0.82[ASN][1000 genomes]
rs3097361	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35586323	0.81[ASN][1000 genomes]
rs3958071	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4728108	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731446	0.90[AMR][1000 genomes]
rs4731448	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4731450	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4731453	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4731454	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5009156	0.82[ASN][1000 genomes]
rs58979384	0.82[ASN][1000 genomes]
rs6467178	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6947697	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948333	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6959839	0.81[AMR][1000 genomes]
rs7797240	0.85[ASN][1000 genomes]
rs930106	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv608401	chr7:128083454-128108776	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128075600-128093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:128075600-128093800	Weak transcription	Pancreas	Pancrea
4	chr7:128078600-128095200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:128084000-128090000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:128084200-128086200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:128084400-128086000	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:128084400-128088800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:128084600-128095800	Weak transcription	Gastric	stomach
10	chr7:128084800-128086000	Weak transcription	Adipose Nuclei	Adipose
11	chr7:128084800-128086200	Weak transcription	A549	lung
12	chr7:128084800-128086400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:128084800-128092000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:128084800-128093600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:128084800-128093800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:128085000-128088000	Weak transcription	GM12878-XiMat	blood
17	chr7:128085800-128087000	Enhancers	K562	blood

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