Variant report

Variant	rs10272295
Chromosome Location	chr7:18934478-18934479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10486315	1.00[ASN][1000 genomes]
rs11978963	1.00[ASN][1000 genomes]
rs62446639	1.00[ASN][1000 genomes]
rs62448067	1.00[ASN][1000 genomes]
rs62448068	1.00[ASN][1000 genomes]
rs62448069	1.00[ASN][1000 genomes]
rs62448073	1.00[ASN][1000 genomes]
rs62448076	1.00[ASN][1000 genomes]
rs62448080	1.00[ASN][1000 genomes]
rs73065901	1.00[ASN][1000 genomes]
rs73684003	1.00[ASN][1000 genomes]
rs7808313	1.00[ASN][1000 genomes]
rs7808698	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887815	chr7:18931219-18958942	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18930000-18934800	Weak transcription	HUVEC	blood vessel
3	chr7:18930200-18934800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:18930800-18934600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:18931000-18934600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:18931200-18943400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:18931400-18934600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:18931400-18940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:18932600-18935200	Enhancers	NHEK	skin
10	chr7:18932800-18935200	Enhancers	HMEC	breast
11	chr7:18934200-18935200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:18934200-18935200	Enhancers	NHDF-Ad	bronchial
13	chr7:18934400-18934800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:18934400-18935200	Enhancers	Osteobl	bone
15	chr7:18934400-18935600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:18934400-18936600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:18934400-18936800	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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