Variant report

Variant	rs62448076
Chromosome Location	chr7:18907324-18907325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10272295	1.00[ASN][1000 genomes]
rs10486315	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978963	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62446639	1.00[ASN][1000 genomes]
rs62448067	1.00[ASN][1000 genomes]
rs62448068	1.00[ASN][1000 genomes]
rs62448069	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448073	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448080	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065901	1.00[ASN][1000 genomes]
rs73684003	1.00[ASN][1000 genomes]
rs7808313	1.00[ASN][1000 genomes]
rs7808698	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18903800-18907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:18904800-18907400	Enhancers	Adipose Nuclei	Adipose
4	chr7:18905200-18908000	Enhancers	NHDF-Ad	bronchial
5	chr7:18906200-18929200	Weak transcription	Left Ventricle	heart
6	chr7:18907000-18910800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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