Variant report

Variant	rs62448073
Chromosome Location	chr7:18891503-18891504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10272295	1.00[ASN][1000 genomes]
rs10486315	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978963	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62446639	1.00[ASN][1000 genomes]
rs62448067	1.00[ASN][1000 genomes]
rs62448068	1.00[ASN][1000 genomes]
rs62448069	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448076	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62448080	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73065901	1.00[ASN][1000 genomes]
rs73684003	1.00[ASN][1000 genomes]
rs7808313	1.00[ASN][1000 genomes]
rs7808698	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18888200-18895000	Weak transcription	Aorta	Aorta
2	chr7:18889600-18895200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:18890000-18894600	Weak transcription	NHDF-Ad	bronchial
4	chr7:18890000-18895000	Weak transcription	Osteobl	bone
5	chr7:18890200-18895600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:18890800-18894600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:18891200-18891800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:18891400-18891800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:18891400-18892000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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