Variant report

Variant	rs10277798
Chromosome Location	chr7:78589357-78589358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10226001	0.83[CEU][hapmap]
rs1073416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536821	0.83[CEU][hapmap]
rs12537792	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12537793	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12539532	0.83[CEU][hapmap]
rs12540925	0.80[CEU][hapmap]
rs12705859	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12705860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1642884	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1642911	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17151659	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs17151674	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1799003	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1799004	0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1799021	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs1799022	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2078428	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2098180	0.87[CEU][hapmap]
rs2159687	0.83[CEU][hapmap]
rs4507689	0.91[EUR][1000 genomes]
rs4727794	0.83[CEU][hapmap]
rs4727796	0.83[CEU][hapmap]
rs4730597	0.84[CEU][hapmap]
rs4730619	0.87[CEU][hapmap]
rs5004248	0.84[CEU][hapmap]
rs6943858	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6948152	0.94[CHB][hapmap]
rs6964007	0.95[CEU][hapmap]
rs763593	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7792974	0.83[CEU][hapmap]
rs984312	0.83[CEU][hapmap]
rs987436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993014	0.89[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78588800-78589600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:78588800-78589600	Enhancers	NHDF-Ad	bronchial

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