Variant report

Variant	rs987436
Chromosome Location	chr7:78599826-78599827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10226001	0.83[CEU][hapmap]
rs10277798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1073416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536821	0.83[CEU][hapmap]
rs12537792	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12537793	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12539532	0.83[CEU][hapmap]
rs12540925	0.80[CEU][hapmap]
rs12705859	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12705860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642884	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1642911	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs17151659	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs17151674	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1799003	0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1799004	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1799021	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs1799022	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2078428	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2098180	0.87[CEU][hapmap]
rs2159687	0.83[CEU][hapmap]
rs4507689	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4727794	0.83[CEU][hapmap]
rs4727796	0.83[CEU][hapmap]
rs4730597	0.84[CEU][hapmap]
rs4730619	0.87[CEU][hapmap]
rs5004248	0.84[CEU][hapmap]
rs6943858	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6948152	0.94[CHB][hapmap]
rs6964007	0.95[CEU][hapmap]
rs763593	0.92[CEU][hapmap];0.84[YRI][hapmap];0.89[EUR][1000 genomes]
rs7792974	0.83[CEU][hapmap]
rs7797351	0.86[YRI][hapmap]
rs984312	0.83[CEU][hapmap]
rs993014	0.89[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78598600-78600000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:78598600-78603000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:78599000-78600200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:78599200-78600600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:78599200-78600800	Enhancers	NHDF-Ad	bronchial
6	chr7:78599400-78600400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:78599400-78600800	Enhancers	Osteobl	bone
8	chr7:78599800-78600200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:78599800-78600400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:78599800-78601200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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