Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10277798	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs1073416	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs12705860	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs1624161	0.92[CEU][hapmap]
rs1625020	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1642884	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1642888	0.91[CEU][hapmap]
rs1642911	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17151659	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs17151674	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs17505	0.91[CEU][hapmap]
rs1799003	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1799004	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1799006	0.92[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1799022	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2052403	1.00[CEU][hapmap]
rs2078428	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs6943858	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6948152	1.00[CHB][hapmap]
rs7797351	0.91[CEU][hapmap]
rs7799287	0.91[CEU][hapmap]
rs987436	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs993014	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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