Variant report
| Variant | rs1799006 |
|---|---|
| Chromosome Location | chr7:78559214-78559215 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:78557178..78560112-chr7:78561287..78563221,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12705860 | 0.82[ASN][1000 genomes] |
| rs1624161 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs1625020 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1642884 | 0.91[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap] |
| rs1642888 | 1.00[CEU][hapmap] |
| rs1642911 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap] |
| rs17151659 | 0.83[JPT][hapmap] |
| rs17151674 | 0.81[CHB][hapmap];0.89[JPT][hapmap] |
| rs17505 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs1799003 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1799004 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1799021 | 0.92[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap] |
| rs1799022 | 0.91[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap] |
| rs2052403 | 0.92[CEU][hapmap] |
| rs6943858 | 0.84[JPT][hapmap] |
| rs6948152 | 0.83[CHB][hapmap] |
| rs7797351 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs7799287 | 1.00[CEU][hapmap] |
| rs987436 | 0.80[ASN][1000 genomes] |
| rs993014 | 0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv482826 | chr7:78548319-78717605 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv471642 | chr7:78548320-78717605 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
