Variant report

Variant	rs10283383
Chromosome Location	chr8:113206719-113206720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10096605	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs10505184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16883363	0.85[JPT][hapmap]
rs7014460	0.85[JPT][hapmap]
rs73338990	1.00[EUR][1000 genomes]
rs7846229	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113205000-113207200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr8:113205200-113207200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:113205800-113207800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:113205800-113207800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:113206000-113207600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:113206000-113207800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:113206000-113208000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:113206000-113208000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:113206200-113207800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:113206600-113207000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:113206600-113207200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr8:113206600-113207400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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