Variant report

Variant	rs73338990
Chromosome Location	chr8:113274632-113274633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10096605	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10283383	1.00[EUR][1000 genomes]
rs10505184	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1303761	0.89[AMR][1000 genomes]
rs57002070	1.00[AMR][1000 genomes]
rs6995491	1.00[AMR][1000 genomes]
rs7014460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73326618	0.88[ASN][1000 genomes]
rs7826419	1.00[AMR][1000 genomes]
rs7846229	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113267600-113275000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:113268800-113275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:113269200-113275000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:113273000-113275000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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