Variant report

Variant	rs10283610
Chromosome Location	chr9:6414218-6414219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:6413251..6414875-chr9:6756450..6759044,2	K562	blood:
2	chr9:6413231..6415998-chr9:6419721..6423966,4	MCF-7	breast:
3	chr9:6411580..6414419-chr9:6755713..6757647,2	K562	blood:
4	chr9:6411739..6415458-chr9:6420668..6426596,8	K562	blood:
5	chr19:47616230..47616761-chr9:6413307..6414303,2	NB4	blood:
6	chr9:6412168..6415418-chr9:6418500..6425043,7	MCF-7	breast:
7	chr9:6412621..6414719-chr9:6496485..6499094,2	K562	blood:

Variant related genes	Relation type
ENSG00000142230	Chromatin interaction
ENSG00000147854	Chromatin interaction
ENSG00000107077	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10975581	0.88[AFR][1000 genomes]
rs10975620	0.83[AFR][1000 genomes]
rs28717698	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
6	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv892160	chr9:6364449-6506038	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv1023419	chr9:6393886-6415025	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	esv3440128	chr9:6412477-6415325	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6411800-6414800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:6411800-6415200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:6411800-6415600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr9:6412000-6414600	Active TSS	Brain Cingulate Gyrus	brain
5	chr9:6412200-6414400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr9:6412200-6414400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:6412200-6414400	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr9:6412200-6414600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:6412200-6414600	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr9:6412200-6414600	Active TSS	Brain Substantia Nigra	brain
11	chr9:6412200-6414600	Active TSS	Colonic Mucosa	Colon
12	chr9:6412200-6414600	Active TSS	Colon Smooth Muscle	Colon
13	chr9:6412200-6414600	Active TSS	Fetal Heart	heart
14	chr9:6412200-6414600	Active TSS	Fetal Lung	lung
15	chr9:6412200-6414600	Active TSS	Rectal Smooth Muscle	rectum
16	chr9:6412200-6414600	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr9:6412200-6414600	Active TSS	Osteobl	bone
18	chr9:6412200-6414800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:6412200-6414800	Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr9:6412200-6414800	Active TSS	Brain Hippocampus Middle	brain
21	chr9:6412200-6414800	Active TSS	Fetal Kidney	kidney
22	chr9:6412200-6414800	Active TSS	Left Ventricle	heart
23	chr9:6412200-6415200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:6412200-6415200	Active TSS	Aorta	Aorta
25	chr9:6412200-6415200	Active TSS	Right Atrium	heart
26	chr9:6412200-6415400	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr9:6412200-6415400	Active TSS	Fetal Intestine Large	intestine
28	chr9:6412200-6415400	Active TSS	Ovary	ovary
29	chr9:6412200-6415400	Active TSS	Psoas Muscle	Psoas
30	chr9:6412200-6415800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:6412400-6414400	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr9:6412400-6414400	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr9:6412400-6414600	Active TSS	Esophagus	oesophagus
34	chr9:6412400-6414600	Active TSS	Gastric	stomach
35	chr9:6412400-6414600	Active TSS	Rectal Mucosa Donor 29	rectum
36	chr9:6412400-6414600	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr9:6412400-6414600	Active TSS	Small Intestine	intestine
38	chr9:6412400-6414600	Active TSS	Stomach Mucosa	stomach
39	chr9:6412400-6414800	Active TSS	Brain Angular Gyrus	brain
40	chr9:6412400-6414800	Active TSS	Fetal Stomach	stomach
41	chr9:6412400-6415000	Active TSS	HSMM	muscle
42	chr9:6412400-6415200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:6412400-6415200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:6412400-6415200	Active TSS	Right Ventricle	heart
45	chr9:6412400-6415200	Active TSS	A549	lung
46	chr9:6412400-6415200	Active TSS	Hela-S3	cervix
47	chr9:6412400-6415400	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr9:6412400-6415400	Active TSS	HSMMtube	muscle
49	chr9:6412600-6414400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:6412600-6414400	Active TSS	Brain Anterior Caudate	brain

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