Variant report

Variant	rs10303
Chromosome Location	chr4:15606260-15606261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15606192..15608992-chr4:15609587..15612464,2	K562	blood:

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FBXL5	hsa-miR-93-5p	chr4:15606256-15606277
2	FBXL5	hsa-miR-130b-3p	chr4:15606258-15606280

Variant related genes	Relation type
FBXL5	miRNA target site

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13148924	1.00[AFR][1000 genomes]
rs34921119	1.00[AFR][1000 genomes]
rs71601486	1.00[AFR][1000 genomes]
rs71601492	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv12941	chr4:15606201-15607407	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
2	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
3	chr4:15565400-15612600	Weak transcription	Brain Substantia Nigra	brain
4	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
5	chr4:15565600-15611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:15568400-15655600	Weak transcription	Gastric	stomach
7	chr4:15575200-15618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:15587200-15612600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:15589800-15621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:15590000-15615600	Weak transcription	Lung	lung
11	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:15593800-15621200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:15594000-15607200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:15594000-15609200	Weak transcription	Psoas Muscle	Psoas
15	chr4:15594600-15617800	Weak transcription	Right Ventricle	heart
16	chr4:15595400-15614000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:15595800-15611400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:15596000-15608000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:15596000-15612800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:15596400-15606600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:15596600-15616400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:15596800-15610000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:15597200-15620600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr4:15598400-15608800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:15598600-15607400	Strong transcription	NHDF-Ad	bronchial
26	chr4:15598600-15607800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:15598600-15611200	Strong transcription	HSMM	muscle
28	chr4:15599200-15607400	Strong transcription	Fetal Lung	lung
29	chr4:15599600-15606800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:15599600-15610000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:15600400-15606800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:15600600-15620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
34	chr4:15601000-15606400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
36	chr4:15601200-15607200	Strong transcription	Primary B cells from cord blood	blood
37	chr4:15601600-15607600	Strong transcription	Osteobl	bone
38	chr4:15601800-15606400	Strong transcription	Brain Hippocampus Middle	brain
39	chr4:15602000-15607600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:15602000-15607600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr4:15602200-15606800	Strong transcription	Adipose Nuclei	Adipose
43	chr4:15602200-15607600	Strong transcription	Liver	Liver
44	chr4:15602200-15609200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr4:15602200-15621200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:15602400-15612600	Weak transcription	Brain Angular Gyrus	brain
47	chr4:15602400-15615600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:15602600-15606400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:15602600-15607400	Strong transcription	Fetal Kidney	kidney
50	chr4:15602600-15615800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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