Variant report

Variant	rs71601486
Chromosome Location	chr4:15655764-15655765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:15650281..15653257-chr4:15654255..15656394,2	K562	blood:
2	chr4:15544533..15546139-chr4:15654596..15656765,2	K562	blood:
3	chr4:15652688..15657004-chr4:15659488..15663550,8	K562	blood:
4	chr4:15651703..15660794-chr4:15677607..15686235,25	K562	blood:
5	chr4:15654775..15659231-chr4:15659761..15666940,9	K562	blood:
6	chr4:15655671..15658131-chr4:15716646..15719360,2	MCF-7	breast:
7	chr4:15479740..15482605-chr4:15655501..15658427,3	MCF-7	breast:
8	chr4:15655590..15657245-chr4:15703796..15706264,2	K562	blood:
9	chr4:15650206..15660298-chr4:15677140..15687517,25	K562	blood:
10	chr4:15654963..15657954-chr4:15685988..15688544,3	MCF-7	breast:
11	chr12:122235040..122237798-chr4:15655451..15658367,2	MCF-7	breast:
12	chr4:15655595..15658742-chr4:15680185..15687360,10	MCF-7	breast:
13	chr4:15649396..15652390-chr4:15655110..15656784,2	MCF-7	breast:
14	chr4:15652080..15658606-chr4:15677363..15685579,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction
ENSG00000237765	Chromatin interaction
ENSG00000272849	Chromatin interaction
ENSG00000048342	Chromatin interaction
ENSG00000109743	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10303	1.00[AFR][1000 genomes]
rs13148924	1.00[AFR][1000 genomes]
rs34921119	1.00[AFR][1000 genomes]
rs71601492	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3464809	chr4:15646178-15656952	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	esv3464811	chr4:15646243-15656896	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
10	esv3464810	chr4:15646249-15656868	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
11	esv3464812	chr4:15646332-15656829	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
12	esv3322833	chr4:15655679-15658227	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15642000-15656200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:15651600-15655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:15651800-15656200	Weak transcription	Spleen	Spleen
4	chr4:15652800-15656400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:15653400-15655800	Flanking Active TSS	Dnd41	blood
6	chr4:15653400-15656000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:15653400-15656600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr4:15653400-15657600	Active TSS	Right Atrium	heart
9	chr4:15653600-15655800	Flanking Active TSS	Osteobl	bone
10	chr4:15653800-15657200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:15653800-15657200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:15653800-15657600	Active TSS	K562	blood
13	chr4:15654000-15656200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:15654000-15656400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:15654000-15657200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:15654200-15656000	Flanking Active TSS	Liver	Liver
17	chr4:15654200-15657000	Active TSS	HMEC	breast
18	chr4:15654200-15657200	Active TSS	Primary monocytes fromperipheralblood	blood
19	chr4:15654400-15655800	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr4:15654400-15656000	Flanking Active TSS	HUVEC	blood vessel
21	chr4:15654400-15656200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr4:15654400-15656200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr4:15654400-15656600	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr4:15654400-15657200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:15654400-15657400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:15654600-15656000	Flanking Active TSS	Fetal Brain Male	brain
27	chr4:15654600-15656000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr4:15654600-15656000	Flanking Active TSS	NH-A	brain
29	chr4:15654600-15656400	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr4:15654600-15657200	Active TSS	Muscle Satellite Cultured Cells	--
31	chr4:15654600-15657200	Active TSS	NHEK	skin
32	chr4:15654600-15657200	Active TSS	NHLF	lung
33	chr4:15654600-15657600	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr4:15654600-15658000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:15654600-15658200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr4:15654800-15655800	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr4:15654800-15655800	Flanking Active TSS	Fetal Intestine Large	intestine
38	chr4:15654800-15656000	Flanking Active TSS	Fetal Kidney	kidney
39	chr4:15654800-15656200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr4:15654800-15656200	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr4:15654800-15656600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:15654800-15657200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:15654800-15657200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:15654800-15657200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:15654800-15657200	Active TSS	HSMM	muscle
46	chr4:15654800-15657200	Active TSS	NHDF-Ad	bronchial
47	chr4:15654800-15657400	Active TSS	Brain Hippocampus Middle	brain
48	chr4:15654800-15657600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:15654800-15657600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:15654800-15657600	Active TSS	Breast Myoepithelial Primary Cells	Breast

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