Variant report

Variant	rs13148924
Chromosome Location	chr4:15740745-15740746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10303	1.00[AFR][1000 genomes]
rs34921119	1.00[AFR][1000 genomes]
rs35929560	1.00[AFR][1000 genomes]
rs71601486	1.00[AFR][1000 genomes]
rs71601492	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13148924	FBXL5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15729000-15743200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:15733600-15742800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:15735400-15742800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:15738400-15742600	Enhancers	Dnd41	blood
8	chr4:15739800-15741000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:15739800-15741400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:15740200-15740800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:15740200-15740800	Enhancers	Osteobl	bone
12	chr4:15740200-15741000	Enhancers	NH-A	brain
13	chr4:15740200-15741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:15740200-15741600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:15740400-15740800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:15740400-15740800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:15740400-15740800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:15740400-15740800	Enhancers	HSMMtube	muscle
19	chr4:15740400-15741000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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