Variant report

Variant	rs10305487
Chromosome Location	chr6:39042646-39042647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39035659..39037472-chr6:39041322..39043034,2	K562	blood:
2	chr6:39035655..39037159-chr6:39041534..39043180,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10305444	1.00[CHB][hapmap]
rs10305491	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10305501	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10305513	1.00[CHB][hapmap]
rs10305515	1.00[CHB][hapmap]
rs10305519	1.00[CHB][hapmap]
rs10484847	1.00[CHB][hapmap]
rs12204668	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12664132	1.00[CHB][hapmap]
rs13192864	1.00[CHB][hapmap]
rs13201998	1.00[CHB][hapmap]
rs13207718	1.00[CHB][hapmap]
rs13216992	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17421805	1.00[CHB][hapmap]
rs17422753	1.00[CHB][hapmap]
rs17632688	1.00[CHB][hapmap]
rs2268643	0.82[EUR][1000 genomes]
rs35887128	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs579786	1.00[CHB][hapmap]
rs6905213	1.00[CHB][hapmap]
rs6923761	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930771	1.00[CHB][hapmap]
rs7451219	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7753618	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296276	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296280	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296290	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv470815	chr6:39022698-39051694	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519907	chr6:39032415-39055012	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1031922	chr6:39034484-39060762	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1793081	chr6:39034516-39048562	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39021200-39072000	Weak transcription	Gastric	stomach
2	chr6:39024200-39057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:39027400-39073000	Weak transcription	Pancreas	Pancrea
4	chr6:39030400-39044800	Weak transcription	Right Atrium	heart
5	chr6:39033600-39052200	Weak transcription	Right Ventricle	heart
6	chr6:39036400-39050200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:39040400-39043200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:39040800-39043800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:39041600-39043200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:39042000-39043000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:39042400-39045600	Enhancers	Fetal Heart	heart
12	chr6:39042400-39045800	Enhancers	GM12878-XiMat	blood

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