Variant report

Variant	rs1031629
Chromosome Location	chr6:70395033-70395034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70394524..70396033-chr6:70397791..70400788,2	K562	blood:
2	chr6:70394533..70397337-chr6:70397791..70400550,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1031631	0.94[JPT][hapmap]
rs11970363	0.94[JPT][hapmap]
rs12173563	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12525951	0.90[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12661224	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12665798	0.94[JPT][hapmap]
rs1457492	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1457494	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1457499	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs1902654	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1993481	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2045444	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2061310	0.94[JPT][hapmap]
rs2125022	0.95[CEU][hapmap]
rs2305837	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2305838	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2305839	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2445957	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs2445958	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs2502597	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs3752787	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3752790	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3778242	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799100	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3799104	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799105	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799112	0.89[JPT][hapmap]
rs3799113	0.95[JPT][hapmap]
rs3799117	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799119	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3799120	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3823078	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3947930	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4304126	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4348273	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4516910	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4624831	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4706271	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4706272	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4706273	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4706274	0.86[JPT][hapmap]
rs4707289	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4707343	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6455338	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6455339	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6902295	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6904680	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6918407	0.95[JPT][hapmap]
rs6920280	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6920725	0.95[JPT][hapmap]
rs6935994	0.95[JPT][hapmap]
rs6938478	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7738792	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7741758	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7743613	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7749324	0.95[JPT][hapmap]
rs7752533	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7758405	0.94[JPT][hapmap]
rs7762400	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7771508	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs921972	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9294848	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs9294851	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9342767	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9342769	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9342773	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9342777	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346333	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346335	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346344	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346348	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346350	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9346353	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9351772	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9351776	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9354879	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9354882	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9354887	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9354888	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9354890	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9354891	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9360397	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9360400	0.95[JPT][hapmap]
rs9364048	0.80[JPT][hapmap]
rs9364054	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9364056	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9364057	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9364058	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9364061	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs960144	0.83[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv351224	chr6:70395032-70395033	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70378800-70407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
4	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
5	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
6	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
7	chr6:70379000-70428400	Weak transcription	Ovary	ovary
8	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
9	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:70380200-70407600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:70380800-70402800	Weak transcription	NHDF-Ad	bronchial
14	chr6:70380800-70467800	Weak transcription	K562	blood
15	chr6:70382000-70406400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:70382200-70435400	Weak transcription	Brain Angular Gyrus	brain
17	chr6:70382400-70430200	Weak transcription	Small Intestine	intestine
18	chr6:70382800-70403400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:70383800-70407800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:70383800-70431000	Weak transcription	Lung	lung
21	chr6:70384000-70415800	Weak transcription	Fetal Lung	lung
22	chr6:70384200-70428400	Weak transcription	Aorta	Aorta
23	chr6:70384200-70431000	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:70384400-70405200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:70384400-70405600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:70384400-70407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:70384600-70406400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:70384600-70407800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:70384600-70407800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:70384600-70409800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:70384600-70417400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:70384800-70406400	Weak transcription	GM12878-XiMat	blood
33	chr6:70385000-70406400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:70385000-70407600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:70385000-70421600	Weak transcription	Fetal Intestine Large	intestine
36	chr6:70385200-70406200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:70386200-70403400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:70386400-70403200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:70386400-70408000	Weak transcription	Placenta	Placenta
40	chr6:70386600-70404400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:70387000-70406400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:70387000-70407800	Weak transcription	Dnd41	blood
43	chr6:70387200-70406400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:70387200-70407400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:70387200-70407800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:70387400-70403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:70387400-70406000	Weak transcription	Adipose Nuclei	Adipose
48	chr6:70387400-70406400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:70387400-70406400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:70387400-70407400	Weak transcription	Fetal Thymus	thymus

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