Variant report

Variant	rs3752790
Chromosome Location	chr6:70507133-70507134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:70505775-70507282	Hela-S3	cervix:	n/a	chr6:70505804-70505815
2	POLR2A	chr6:70505871-70507364	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr6:70506919-70507228	GM12891	blood:	n/a	n/a
4	MAX	chr6:70506668-70507304	A549	lung:	n/a	n/a
5	CEBPB	chr6:70506353-70507273	H1-hESC	embryonic stem cell:	n/a	n/a
6	CREB1	chr6:70505936-70507338	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:70505411-70507510	Raji	blood:	n/a	n/a
8	BCLAF1	chr6:70506537-70507313	GM12878	blood:	n/a	chr6:70506537-70506550 chr6:70506974-70506987 chr6:70506880-70506889 chr6:70506946-70506959
9	POLR2A	chr6:70506607-70507269	HCT-116	colon:	n/a	n/a
10	FOXM1	chr6:70506550-70507258	GM12878	blood:	n/a	n/a
11	MYBL2	chr6:70506542-70507224	HepG2	liver:	n/a	n/a
12	CTCF	chr6:70506739-70507245	MCF-7	breast:	n/a	chr6:70506922-70506943 chr6:70506928-70506944 chr6:70506933-70506942 chr6:70506927-70506945
13	TEAD4	chr6:70506742-70507189	H1-hESC	embryonic stem cell:	n/a	n/a
14	RCOR1	chr6:70505965-70507224	Hela-S3	cervix:	n/a	n/a
15	FOXA1	chr6:70506540-70507308	T-47D	breast:	n/a	n/a
16	ELF1	chr6:70506490-70507270	MCF-7	breast:	n/a	chr6:70506617-70506629 chr6:70506951-70506963
17	SP1	chr6:70506647-70507198	GM12878	blood:	n/a	chr6:70506954-70506963 chr6:70506978-70506988 chr6:70506887-70506898 chr6:70506952-70506964 chr6:70506953-70506963 chr6:70506884-70506898 chr6:70506977-70506989 chr6:70506978-70506987 chr6:70506977-70506989 chr6:70506952-70506964 chr6:70506979-70506988 chr6:70506953-70506963 chr6:70506953-70506962 chr6:70506877-70506884 chr6:70506878-70506890 chr6:70506979-70506988 chr6:70506978-70506988 chr6:70506954-70506963 chr6:70506952-70506963
18	YY1	chr6:70506117-70507159	GM12878	blood:	n/a	chr6:70506882-70506891 chr6:70506532-70506546 chr6:70506672-70506681 chr6:70506535-70506549 chr6:70506953-70506962 chr6:70506322-70506333 chr6:70506528-70506539 chr6:70506765-70506777 chr6:70506537-70506546
19	MAX	chr6:70506504-70507322	MCF-7	breast:	n/a	n/a
20	POLR2A	chr6:70506554-70507312	HL-60	blood:	n/a	n/a
21	ATF1	chr6:70506005-70507246	K562	blood:	n/a	n/a
22	SMC3	chr6:70506621-70507296	Hela-S3	cervix:	n/a	chr6:70506929-70506939 chr6:70506929-70506943
23	REST	chr6:70506399-70507276	HL-60	blood:	n/a	chr6:70506532-70506545 chr6:70506885-70506898
24	RELA	chr6:70505339-70507320	GM15510	blood:	n/a	n/a
25	CEBPB	chr6:70506836-70507300	MCF-7	breast:	n/a	n/a
26	POLR2A	chr6:70506028-70507278	K562	blood:	n/a	n/a
27	BHLHE40	chr6:70506639-70507301	HepG2	liver:	n/a	chr6:70506980-70506996
28	CEBPB	chr6:70506889-70507393	A549	lung:	n/a	n/a
29	CTCF	chr6:70506570-70507351	A549	lung:	n/a	chr6:70506922-70506943 chr6:70506928-70506944 chr6:70506933-70506942 chr6:70506927-70506945
30	RCOR1	chr6:70506602-70507145	HepG2	liver:	n/a	n/a
31	POLR2A	chr6:70505185-70507404	GM12891	blood:	n/a	n/a
32	CEBPB	chr6:70506310-70507260	HepG2	liver:	n/a	n/a
33	NFIC	chr6:70506592-70507282	GM12878	blood:	n/a	n/a
34	FOS	chr6:70506858-70507221	MCF10A-Er-Src	breast:	n/a	chr6:70507002-70507011
35	MAX	chr6:70506654-70507392	A549	lung:	n/a	n/a
36	POLR2A	chr6:70505982-70507261	GM12878	blood:	n/a	n/a
37	POLR2A	chr6:70506025-70507214	HepG2	liver:	n/a	n/a
38	POLR2A	chr6:70506525-70507293	SK-N-MC	brain:	n/a	n/a
39	YY1	chr6:70506514-70507158	SK-N-SH	brain:	n/a	chr6:70506882-70506891 chr6:70506532-70506546 chr6:70506672-70506681 chr6:70506535-70506549 chr6:70506953-70506962 chr6:70506528-70506539 chr6:70506765-70506777 chr6:70506537-70506546
40	POLR2A	chr6:70505459-70507274	GM19193	blood:	n/a	n/a
41	ELK1	chr6:70506570-70507163	Hela-S3	cervix:	n/a	n/a
42	RAD21	chr6:70506764-70507169	GM12878	blood:	n/a	chr6:70506929-70506939 chr6:70506925-70506944
43	JUN	chr6:70505910-70507407	K562	blood:	n/a	chr6:70507002-70507011 chr6:70506594-70506603 chr6:70506541-70506550
44	POLR2A	chr6:70505958-70507202	H1-hESC	embryonic stem cell:	n/a	n/a
45	TBP	chr6:70506602-70507263	Hela-S3	cervix:	n/a	n/a
46	JUND	chr6:70506764-70507206	HepG2	liver:	n/a	chr6:70507002-70507011
47	TEAD4	chr6:70506726-70507230	K562	blood:	n/a	n/a
48	POLR2A	chr6:70506110-70507208	GM12878	blood:	n/a	n/a
49	TBL1XR1	chr6:70506615-70507240	K562	blood:	n/a	n/a
50	POLR2A	chr6:70506034-70507332	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70499217..70503850-chr6:70504773..70507699,6	K562	blood:

Variant related genes	Relation type
LMBRD1	TF binding region
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs1026441	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031629	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1031631	0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs1078026	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10945188	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970363	0.82[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12173563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12175229	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12525951	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12661224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662657	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665798	0.82[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs1457492	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1457493	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1457494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1457499	0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs1457500	0.90[EUR][1000 genomes]
rs1542412	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1563606	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1563607	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563609	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868145	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1902650	0.91[EUR][1000 genomes]
rs1902654	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902655	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1902656	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1963956	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1993481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1993483	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2045444	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2061310	0.81[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes]
rs2125022	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2125023	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125024	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168713	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2290710	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305838	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445957	0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2445958	0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs2445960	0.83[EUR][1000 genomes]
rs2445962	0.89[EUR][1000 genomes]
rs2502597	0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs2881080	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3214021	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3752787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3752789	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3778242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3799100	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799106	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799112	0.81[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]
rs3799113	0.82[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs3799117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3799119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816563	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3823078	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3823079	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3947930	0.82[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4304126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4348273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4365888	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4418153	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4473825	0.86[EUR][1000 genomes]
rs4516910	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4533950	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45559535	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4624831	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4706271	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706274	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4706283	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4706296	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4707278	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4707289	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4707343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707359	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707384	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707387	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4707388	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707389	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4707390	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4707392	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5027848	0.92[EUR][1000 genomes]
rs57913618	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59459704	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59510607	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59738216	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407462	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62407463	0.98[EUR][1000 genomes]
rs62408999	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6455337	0.87[EUR][1000 genomes]
rs6455338	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6455339	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67438720	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67678871	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68181489	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6904680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908871	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6909708	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918407	0.82[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs6919766	0.89[EUR][1000 genomes]
rs6920280	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920725	0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6931124	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6935994	0.82[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6938478	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72910810	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7738792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739633	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741758	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742087	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7743876	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7749324	0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7752533	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755173	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755189	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7755920	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7758405	0.82[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs7759966	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7762400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7767789	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7771508	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs7775172	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8180582	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs921972	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9294848	0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs9294851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9342767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9342769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9342770	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9342772	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9342773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9342774	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9346327	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9346328	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9346332	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346336	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346337	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346338	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346339	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346340	0.92[EUR][1000 genomes]
rs9346343	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9346348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346351	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346352	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346353	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346354	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346355	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9351772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9351774	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354876	0.86[EUR][1000 genomes]
rs9354877	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9354879	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9354881	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9354882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9354883	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9354885	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9354887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9354888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354889	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9354890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354892	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9354893	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9360397	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9360399	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9360400	0.82[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs9360404	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9360405	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364046	0.86[EUR][1000 genomes]
rs9364047	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9364048	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9364049	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9364050	0.90[EUR][1000 genomes]
rs9364051	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364053	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364054	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364055	0.91[EUR][1000 genomes]
rs9364056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9364058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364060	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364061	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364063	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9364064	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs960144	0.95[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70504600-70507200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr6:70505000-70507200	Active TSS	Rectal Smooth Muscle	rectum
3	chr6:70505000-70507400	Active TSS	Aorta	Aorta
4	chr6:70505000-70507600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:70505000-70507800	Active TSS	Stomach Smooth Muscle	stomach
6	chr6:70505200-70507200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:70505200-70507200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:70505200-70507200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:70505200-70507200	Active TSS	Duodenum Mucosa	Duodenum
10	chr6:70505200-70507200	Active TSS	Fetal Intestine Large	intestine
11	chr6:70505200-70507200	Active TSS	Fetal Intestine Small	intestine
12	chr6:70505200-70507400	Active TSS	Thymus	Thymus
13	chr6:70505400-70507200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:70505400-70507200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:70505400-70507200	Active TSS	Brain Angular Gyrus	brain
16	chr6:70505400-70507200	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr6:70505400-70507200	Active TSS	Pancreas	Pancrea
18	chr6:70505400-70507200	Active TSS	Right Atrium	heart
19	chr6:70505400-70507200	Active TSS	HSMM	muscle
20	chr6:70505400-70507200	Active TSS	Osteobl	bone
21	chr6:70505400-70507400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:70505400-70507400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:70505400-70507400	Active TSS	Brain Germinal Matrix	brain
24	chr6:70505400-70507400	Active TSS	Brain Hippocampus Middle	brain
25	chr6:70505400-70507400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:70505400-70507400	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:70505400-70507800	Active TSS	Colonic Mucosa	Colon
28	chr6:70505600-70507200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:70505600-70507200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:70505600-70507200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:70505600-70507200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:70505600-70507200	Active TSS	Colon Smooth Muscle	Colon
33	chr6:70505600-70507200	Active TSS	Psoas Muscle	Psoas
34	chr6:70505600-70507200	Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr6:70505600-70507200	Active TSS	NHLF	lung
36	chr6:70505600-70507400	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:70505600-70507400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:70505600-70507400	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr6:70505600-70507400	Active TSS	Ovary	ovary
40	chr6:70505600-70507400	Active TSS	Right Ventricle	heart
41	chr6:70505800-70507200	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr6:70505800-70507200	Active TSS	Brain Anterior Caudate	brain
43	chr6:70505800-70507200	Active TSS	Placenta	Placenta
44	chr6:70505800-70507200	Active TSS	Left Ventricle	heart
45	chr6:70505800-70507400	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr6:70505800-70507400	Active TSS	Fetal Muscle Trunk	muscle
47	chr6:70506000-70507200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:70506000-70507200	Active TSS	Esophagus	oesophagus
49	chr6:70506000-70507400	Active TSS	Fetal Brain Male	brain
50	chr6:70506000-70507400	Active TSS	Lung	lung

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