Variant report

Variant	rs9364046
Chromosome Location	chr6:70381868-70381869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs1026441	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1031631	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1078026	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10945188	0.87[EUR][1000 genomes]
rs11970363	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12173563	0.86[EUR][1000 genomes]
rs12175229	0.92[EUR][1000 genomes]
rs12525951	0.85[EUR][1000 genomes]
rs12661224	0.88[EUR][1000 genomes]
rs12662657	0.87[EUR][1000 genomes]
rs12665798	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1457492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1457493	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1457494	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1457499	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1457500	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542412	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542413	0.84[AFR][1000 genomes]
rs1563606	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1563607	0.87[EUR][1000 genomes]
rs1563609	0.87[EUR][1000 genomes]
rs16868145	0.87[EUR][1000 genomes]
rs1902650	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1902654	0.86[EUR][1000 genomes]
rs1902655	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1902656	0.85[EUR][1000 genomes]
rs1963956	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1993481	0.87[EUR][1000 genomes]
rs1993483	0.86[EUR][1000 genomes]
rs2045444	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2061310	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2125022	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125023	0.86[EUR][1000 genomes]
rs2125024	0.86[EUR][1000 genomes]
rs2168713	0.87[EUR][1000 genomes]
rs2290710	0.88[EUR][1000 genomes]
rs2305837	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2305838	0.86[EUR][1000 genomes]
rs2305839	0.86[EUR][1000 genomes]
rs2445957	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2445958	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2445959	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445960	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2445962	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2502597	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2881080	0.87[EUR][1000 genomes]
rs3214021	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3752787	0.87[EUR][1000 genomes]
rs3752789	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3752790	0.86[EUR][1000 genomes]
rs3778242	0.86[EUR][1000 genomes]
rs3799100	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3799104	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3799105	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3799106	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3799112	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799113	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3799117	0.88[EUR][1000 genomes]
rs3799119	0.87[EUR][1000 genomes]
rs3799120	0.87[EUR][1000 genomes]
rs3816563	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3823078	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3823079	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3947930	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4304126	0.86[EUR][1000 genomes]
rs4348273	0.86[EUR][1000 genomes]
rs4365888	0.85[EUR][1000 genomes]
rs4418153	0.85[EUR][1000 genomes]
rs4473825	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4516910	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4533950	0.85[EUR][1000 genomes]
rs45559535	0.88[EUR][1000 genomes]
rs4624831	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4706271	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4706272	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4706273	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4706283	0.89[EUR][1000 genomes]
rs4706296	0.86[EUR][1000 genomes]
rs4707278	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4707289	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4707343	0.87[EUR][1000 genomes]
rs4707359	0.86[EUR][1000 genomes]
rs4707384	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707387	0.86[EUR][1000 genomes]
rs4707392	0.86[EUR][1000 genomes]
rs5027848	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57913618	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59459704	0.88[EUR][1000 genomes]
rs59510607	0.86[EUR][1000 genomes]
rs59738216	0.87[EUR][1000 genomes]
rs62407462	0.85[EUR][1000 genomes]
rs62407463	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62408999	0.87[EUR][1000 genomes]
rs6455337	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455338	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6455339	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67438720	0.86[EUR][1000 genomes]
rs67678871	0.86[EUR][1000 genomes]
rs68181489	0.87[EUR][1000 genomes]
rs6902295	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6904680	0.87[EUR][1000 genomes]
rs6908871	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6909708	0.88[EUR][1000 genomes]
rs6918407	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919766	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6920280	0.85[EUR][1000 genomes]
rs6920725	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6931124	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6935994	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6938478	0.87[EUR][1000 genomes]
rs72910810	0.88[EUR][1000 genomes]
rs7738792	0.87[EUR][1000 genomes]
rs7739633	0.87[EUR][1000 genomes]
rs7741758	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742015	0.84[AFR][1000 genomes]
rs7742087	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7743613	0.86[EUR][1000 genomes]
rs7743876	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7749324	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7752533	0.87[EUR][1000 genomes]
rs7755173	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7755189	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7758405	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759966	0.87[EUR][1000 genomes]
rs7762400	0.88[EUR][1000 genomes]
rs7763213	0.81[AFR][1000 genomes]
rs7767789	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7771508	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7774371	0.82[AFR][1000 genomes]
rs7775172	0.87[EUR][1000 genomes]
rs8180582	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9185	0.84[AFR][1000 genomes]
rs921972	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs921973	0.81[AFR][1000 genomes]
rs9294848	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294851	0.87[EUR][1000 genomes]
rs930886	0.81[AFR][1000 genomes]
rs9342766	0.81[AFR][1000 genomes]
rs9342767	0.88[EUR][1000 genomes]
rs9342770	0.88[EUR][1000 genomes]
rs9342772	0.85[EUR][1000 genomes]
rs9342773	0.85[EUR][1000 genomes]
rs9342774	0.87[EUR][1000 genomes]
rs9342777	0.86[EUR][1000 genomes]
rs9346327	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9346328	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9346332	0.89[EUR][1000 genomes]
rs9346333	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9346335	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9346336	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9346337	0.88[EUR][1000 genomes]
rs9346338	0.87[EUR][1000 genomes]
rs9346339	0.87[EUR][1000 genomes]
rs9346340	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9346343	0.87[EUR][1000 genomes]
rs9346344	0.86[EUR][1000 genomes]
rs9346348	0.86[EUR][1000 genomes]
rs9346350	0.87[EUR][1000 genomes]
rs9346351	0.87[EUR][1000 genomes]
rs9346352	0.87[EUR][1000 genomes]
rs9346353	0.86[EUR][1000 genomes]
rs9346354	0.86[EUR][1000 genomes]
rs9346355	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9351772	0.89[EUR][1000 genomes]
rs9351774	0.86[EUR][1000 genomes]
rs9351775	0.86[EUR][1000 genomes]
rs9351776	0.87[EUR][1000 genomes]
rs9354876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354877	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9354879	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9354881	0.89[EUR][1000 genomes]
rs9354882	0.88[EUR][1000 genomes]
rs9354885	0.85[EUR][1000 genomes]
rs9354887	0.87[EUR][1000 genomes]
rs9354888	0.87[EUR][1000 genomes]
rs9354889	0.87[EUR][1000 genomes]
rs9354890	0.87[EUR][1000 genomes]
rs9354891	0.87[EUR][1000 genomes]
rs9354892	0.86[EUR][1000 genomes]
rs9354893	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9360397	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360399	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9360400	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9360404	0.86[EUR][1000 genomes]
rs9360405	0.86[EUR][1000 genomes]
rs9364047	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9364049	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9364050	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9364051	0.90[EUR][1000 genomes]
rs9364053	0.88[EUR][1000 genomes]
rs9364054	0.88[EUR][1000 genomes]
rs9364055	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9364056	0.88[EUR][1000 genomes]
rs9364057	0.85[EUR][1000 genomes]
rs9364058	0.86[EUR][1000 genomes]
rs9364060	0.87[EUR][1000 genomes]
rs9364061	0.87[EUR][1000 genomes]
rs9364063	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9364064	0.85[EUR][1000 genomes]
rs960144	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70374200-70382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:70374200-70383200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:70376400-70382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:70376800-70382400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:70377600-70382400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:70377600-70392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:70378400-70382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:70378400-70383200	Weak transcription	Aorta	Aorta
9	chr6:70378400-70388000	Weak transcription	Esophagus	oesophagus
10	chr6:70378400-70392600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:70378600-70383600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:70378600-70384000	Weak transcription	Placenta	Placenta
13	chr6:70378600-70384200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:70378800-70382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:70378800-70382000	Weak transcription	Fetal Lung	lung
16	chr6:70378800-70382200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:70378800-70382200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:70378800-70383200	Weak transcription	Lung	lung
19	chr6:70378800-70385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:70378800-70386200	Weak transcription	Right Ventricle	heart
21	chr6:70378800-70388000	Weak transcription	Fetal Brain Female	brain
22	chr6:70378800-70388400	Weak transcription	Colonic Mucosa	Colon
23	chr6:70378800-70407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
25	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
26	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
27	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
28	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
29	chr6:70379000-70383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr6:70379000-70383600	Weak transcription	HSMMtube	muscle
31	chr6:70379000-70428400	Weak transcription	Ovary	ovary
32	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
33	chr6:70379200-70390200	Weak transcription	HSMM	muscle
34	chr6:70379400-70382600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:70379800-70382400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:70380000-70383600	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:70380000-70387200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:70380000-70387400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr6:70380000-70387600	Strong transcription	Liver	Liver
41	chr6:70380000-70390600	Weak transcription	Thymus	Thymus
42	chr6:70380000-70390800	Weak transcription	Pancreas	Pancrea
43	chr6:70380200-70382800	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:70380200-70384600	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:70380200-70387400	Strong transcription	Fetal Thymus	thymus
46	chr6:70380200-70391000	Strong transcription	Primary B cells from cord blood	blood
47	chr6:70380200-70392800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:70380200-70407600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:70380400-70385400	Weak transcription	Gastric	stomach
50	chr6:70380400-70390800	Weak transcription	Fetal Muscle Trunk	muscle

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