Variant report

Variant	rs62407463
Chromosome Location	chr6:70515909-70515910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:198)

rs_ID	r²[population]
rs1026441	0.91[EUR][1000 genomes]
rs1031631	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1078026	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10945188	0.98[EUR][1000 genomes]
rs11970363	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12173563	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12175229	0.92[EUR][1000 genomes]
rs12525951	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12661224	0.96[EUR][1000 genomes]
rs12662657	0.98[EUR][1000 genomes]
rs12665798	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1457492	0.93[EUR][1000 genomes]
rs1457493	0.92[EUR][1000 genomes]
rs1457494	0.92[EUR][1000 genomes]
rs1457499	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1457500	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1542412	0.91[EUR][1000 genomes]
rs1563606	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1563607	0.98[EUR][1000 genomes]
rs1563609	0.98[EUR][1000 genomes]
rs16868145	0.98[EUR][1000 genomes]
rs1902650	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1902654	0.98[EUR][1000 genomes]
rs1902655	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1902656	0.97[EUR][1000 genomes]
rs1963956	0.91[EUR][1000 genomes]
rs1993481	0.95[EUR][1000 genomes]
rs1993483	0.97[EUR][1000 genomes]
rs2045444	0.91[EUR][1000 genomes]
rs2061310	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2125022	0.91[EUR][1000 genomes]
rs2125023	0.98[EUR][1000 genomes]
rs2125024	0.98[EUR][1000 genomes]
rs2168713	0.98[EUR][1000 genomes]
rs2290710	0.96[EUR][1000 genomes]
rs2305837	0.95[EUR][1000 genomes]
rs2305838	0.98[EUR][1000 genomes]
rs2305839	0.98[EUR][1000 genomes]
rs2445957	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2445958	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2445959	0.80[AMR][1000 genomes]
rs2445960	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2445962	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2502597	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2881080	0.98[EUR][1000 genomes]
rs3214021	0.91[EUR][1000 genomes]
rs3752787	0.98[EUR][1000 genomes]
rs3752789	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3752790	0.98[EUR][1000 genomes]
rs3778242	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3799100	0.92[EUR][1000 genomes]
rs3799104	0.93[EUR][1000 genomes]
rs3799105	0.92[EUR][1000 genomes]
rs3799106	0.94[EUR][1000 genomes]
rs3799112	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3799113	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3799117	0.96[EUR][1000 genomes]
rs3799119	0.98[EUR][1000 genomes]
rs3799120	0.98[EUR][1000 genomes]
rs3816563	0.91[EUR][1000 genomes]
rs3823078	0.91[EUR][1000 genomes]
rs3823079	0.90[EUR][1000 genomes]
rs3947930	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4304126	0.99[EUR][1000 genomes]
rs4348273	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4365888	0.95[EUR][1000 genomes]
rs4418153	0.98[EUR][1000 genomes]
rs4473825	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4516910	0.92[EUR][1000 genomes]
rs4533950	0.95[EUR][1000 genomes]
rs45559535	0.96[EUR][1000 genomes]
rs4624831	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4706271	0.91[EUR][1000 genomes]
rs4706272	0.91[EUR][1000 genomes]
rs4706273	0.92[EUR][1000 genomes]
rs4706283	0.94[EUR][1000 genomes]
rs4706296	0.99[EUR][1000 genomes]
rs4707278	0.91[EUR][1000 genomes]
rs4707289	0.92[EUR][1000 genomes]
rs4707343	0.97[EUR][1000 genomes]
rs4707359	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4707384	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4707387	0.99[EUR][1000 genomes]
rs4707388	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4707390	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4707392	0.99[EUR][1000 genomes]
rs5027848	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57913618	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59459704	0.95[EUR][1000 genomes]
rs59510607	0.98[EUR][1000 genomes]
rs59738216	0.98[EUR][1000 genomes]
rs62407462	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62408999	0.98[EUR][1000 genomes]
rs6455337	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6455338	0.91[EUR][1000 genomes]
rs6455339	0.91[EUR][1000 genomes]
rs67438720	0.98[EUR][1000 genomes]
rs67678871	0.97[EUR][1000 genomes]
rs68181489	0.98[EUR][1000 genomes]
rs6902295	0.94[EUR][1000 genomes]
rs6904680	0.97[EUR][1000 genomes]
rs6908871	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6909708	0.96[EUR][1000 genomes]
rs6918407	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6919766	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6920280	0.96[EUR][1000 genomes]
rs6920725	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6931124	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935590	0.88[AFR][1000 genomes]
rs6935994	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6938478	0.97[EUR][1000 genomes]
rs72910810	0.96[EUR][1000 genomes]
rs7738792	0.98[EUR][1000 genomes]
rs7739633	0.98[EUR][1000 genomes]
rs7741758	0.95[EUR][1000 genomes]
rs7742087	0.94[EUR][1000 genomes]
rs7743613	0.97[EUR][1000 genomes]
rs7743876	0.94[EUR][1000 genomes]
rs7749324	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752533	0.98[EUR][1000 genomes]
rs7755173	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7755189	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7755920	0.88[EUR][1000 genomes]
rs7758405	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7759966	0.95[EUR][1000 genomes]
rs7762400	0.96[EUR][1000 genomes]
rs7767789	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7771508	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7775172	0.98[EUR][1000 genomes]
rs8180582	0.90[EUR][1000 genomes]
rs921972	0.93[EUR][1000 genomes]
rs9294848	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9294851	0.97[EUR][1000 genomes]
rs9342767	0.95[EUR][1000 genomes]
rs9342769	0.85[EUR][1000 genomes]
rs9342770	0.96[EUR][1000 genomes]
rs9342772	0.96[EUR][1000 genomes]
rs9342773	0.97[EUR][1000 genomes]
rs9342774	0.98[EUR][1000 genomes]
rs9342777	0.99[EUR][1000 genomes]
rs9346327	0.90[EUR][1000 genomes]
rs9346328	0.90[EUR][1000 genomes]
rs9346332	0.95[EUR][1000 genomes]
rs9346333	0.95[EUR][1000 genomes]
rs9346335	0.95[EUR][1000 genomes]
rs9346336	0.95[EUR][1000 genomes]
rs9346337	0.96[EUR][1000 genomes]
rs9346338	0.96[EUR][1000 genomes]
rs9346339	0.96[EUR][1000 genomes]
rs9346340	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9346343	0.97[EUR][1000 genomes]
rs9346344	0.97[EUR][1000 genomes]
rs9346348	0.98[EUR][1000 genomes]
rs9346350	0.98[EUR][1000 genomes]
rs9346351	0.98[EUR][1000 genomes]
rs9346352	0.98[EUR][1000 genomes]
rs9346353	0.97[EUR][1000 genomes]
rs9346354	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9346355	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9351772	0.95[EUR][1000 genomes]
rs9351774	0.98[EUR][1000 genomes]
rs9351775	0.97[EUR][1000 genomes]
rs9351776	0.98[EUR][1000 genomes]
rs9354876	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9354877	0.90[EUR][1000 genomes]
rs9354879	0.91[EUR][1000 genomes]
rs9354881	0.95[EUR][1000 genomes]
rs9354882	0.95[EUR][1000 genomes]
rs9354883	0.85[EUR][1000 genomes]
rs9354885	0.93[EUR][1000 genomes]
rs9354887	0.98[EUR][1000 genomes]
rs9354888	0.98[EUR][1000 genomes]
rs9354889	0.98[EUR][1000 genomes]
rs9354890	0.98[EUR][1000 genomes]
rs9354891	0.98[EUR][1000 genomes]
rs9354892	0.99[EUR][1000 genomes]
rs9354893	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360397	0.91[EUR][1000 genomes]
rs9360399	0.95[EUR][1000 genomes]
rs9360400	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9360404	0.98[EUR][1000 genomes]
rs9360405	0.98[EUR][1000 genomes]
rs9364046	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9364047	0.91[EUR][1000 genomes]
rs9364049	0.91[EUR][1000 genomes]
rs9364050	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9364051	0.94[EUR][1000 genomes]
rs9364053	0.96[EUR][1000 genomes]
rs9364054	0.96[EUR][1000 genomes]
rs9364055	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9364056	0.96[EUR][1000 genomes]
rs9364057	0.97[EUR][1000 genomes]
rs9364058	0.98[EUR][1000 genomes]
rs9364060	0.98[EUR][1000 genomes]
rs9364061	0.98[EUR][1000 genomes]
rs9364063	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9364064	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs960144	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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