Variant report

Variant	rs2445959
Chromosome Location	chr6:70401629-70401630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70401464..70403488-chr6:70405227..70406858,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1026441	0.84[EUR][1000 genomes]
rs1031631	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1078026	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11970363	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12055543	0.82[AFR][1000 genomes]
rs12175229	0.83[EUR][1000 genomes]
rs12665798	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1457492	0.81[EUR][1000 genomes]
rs1457493	0.83[EUR][1000 genomes]
rs1457494	0.83[EUR][1000 genomes]
rs1457499	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1457500	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1542412	0.84[EUR][1000 genomes]
rs1542413	0.81[AFR][1000 genomes]
rs1563606	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1902650	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1902655	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1963956	0.84[EUR][1000 genomes]
rs1993482	0.80[AFR][1000 genomes]
rs2045444	0.84[EUR][1000 genomes]
rs2061310	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2125022	0.84[EUR][1000 genomes]
rs2305837	0.80[EUR][1000 genomes]
rs2445957	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2445958	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445960	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445962	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2445964	0.81[AFR][1000 genomes]
rs2502597	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3214021	0.84[EUR][1000 genomes]
rs3752789	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3799100	0.83[EUR][1000 genomes]
rs3799104	0.82[EUR][1000 genomes]
rs3799106	0.81[EUR][1000 genomes]
rs3799112	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3799113	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3816563	0.84[EUR][1000 genomes]
rs3823078	0.84[EUR][1000 genomes]
rs3823079	0.83[EUR][1000 genomes]
rs3947930	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4473825	0.81[AFR][1000 genomes]
rs4516910	0.81[EUR][1000 genomes]
rs4706271	0.83[EUR][1000 genomes]
rs4706272	0.84[EUR][1000 genomes]
rs4706273	0.83[EUR][1000 genomes]
rs4706283	0.81[EUR][1000 genomes]
rs4707278	0.84[EUR][1000 genomes]
rs4707289	0.83[EUR][1000 genomes]
rs4707384	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5027848	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57913618	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59459704	0.81[EUR][1000 genomes]
rs62407463	0.80[AMR][1000 genomes]
rs6455337	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6455338	0.84[EUR][1000 genomes]
rs6455339	0.84[EUR][1000 genomes]
rs6902295	0.81[EUR][1000 genomes]
rs6905645	0.80[AFR][1000 genomes]
rs6918407	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919766	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6920725	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6935994	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7741758	0.80[EUR][1000 genomes]
rs7742015	0.81[AFR][1000 genomes]
rs7742087	0.81[EUR][1000 genomes]
rs7743876	0.81[EUR][1000 genomes]
rs7749324	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7749509	0.81[AFR][1000 genomes]
rs7758405	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763213	0.84[AFR][1000 genomes]
rs7771508	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8180582	0.83[EUR][1000 genomes]
rs9185	0.81[AFR][1000 genomes]
rs921972	0.82[EUR][1000 genomes]
rs921973	0.84[AFR][1000 genomes]
rs9294848	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs930886	0.81[AFR][1000 genomes]
rs9342766	0.84[AFR][1000 genomes]
rs9342767	0.81[EUR][1000 genomes]
rs9342768	0.83[AFR][1000 genomes]
rs9346327	0.83[EUR][1000 genomes]
rs9346328	0.83[EUR][1000 genomes]
rs9346332	0.80[EUR][1000 genomes]
rs9346333	0.80[EUR][1000 genomes]
rs9346335	0.80[EUR][1000 genomes]
rs9346336	0.80[EUR][1000 genomes]
rs9346340	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346341	0.80[AFR][1000 genomes]
rs9346355	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9351772	0.80[EUR][1000 genomes]
rs9354876	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9354877	0.83[EUR][1000 genomes]
rs9354879	0.84[EUR][1000 genomes]
rs9354881	0.80[EUR][1000 genomes]
rs9354882	0.81[EUR][1000 genomes]
rs9360397	0.84[EUR][1000 genomes]
rs9360399	0.80[EUR][1000 genomes]
rs9360400	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9364046	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9364047	0.84[EUR][1000 genomes]
rs9364050	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9364051	0.81[EUR][1000 genomes]
rs9364055	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs960144	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70378800-70407400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
4	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
5	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
6	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
7	chr6:70379000-70428400	Weak transcription	Ovary	ovary
8	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
9	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:70380200-70407600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:70380800-70402800	Weak transcription	NHDF-Ad	bronchial
14	chr6:70380800-70467800	Weak transcription	K562	blood
15	chr6:70382000-70406400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:70382200-70435400	Weak transcription	Brain Angular Gyrus	brain
17	chr6:70382400-70430200	Weak transcription	Small Intestine	intestine
18	chr6:70382800-70403400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:70383800-70407800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:70383800-70431000	Weak transcription	Lung	lung
21	chr6:70384000-70415800	Weak transcription	Fetal Lung	lung
22	chr6:70384200-70428400	Weak transcription	Aorta	Aorta
23	chr6:70384200-70431000	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:70384400-70405200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:70384400-70405600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:70384400-70407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:70384600-70406400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:70384600-70407800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:70384600-70407800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:70384600-70409800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:70384600-70417400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:70384800-70406400	Weak transcription	GM12878-XiMat	blood
33	chr6:70385000-70406400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:70385000-70407600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:70385000-70421600	Weak transcription	Fetal Intestine Large	intestine
36	chr6:70385200-70406200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:70386200-70403400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:70386400-70403200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:70386400-70408000	Weak transcription	Placenta	Placenta
40	chr6:70386600-70404400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:70387000-70406400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:70387000-70407800	Weak transcription	Dnd41	blood
43	chr6:70387200-70406400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:70387200-70407400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:70387200-70407800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:70387400-70403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:70387400-70406000	Weak transcription	Adipose Nuclei	Adipose
48	chr6:70387400-70406400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:70387400-70406400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:70387400-70407400	Weak transcription	Fetal Thymus	thymus

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