Variant report

Variant	rs7763213
Chromosome Location	chr6:70416294-70416295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1031631	0.86[AFR][1000 genomes]
rs12055543	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665798	0.81[AFR][1000 genomes]
rs1457499	0.90[AFR][1000 genomes]
rs1457500	0.90[AFR][1000 genomes]
rs1542413	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1563608	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563610	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1840940	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1840942	0.92[ASN][1000 genomes]
rs1902650	0.87[AFR][1000 genomes]
rs1993482	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061310	0.89[AFR][1000 genomes]
rs2168712	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2345564	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs2445957	0.84[AFR][1000 genomes]
rs2445958	0.84[AFR][1000 genomes]
rs2445959	0.84[AFR][1000 genomes]
rs2445960	0.84[AFR][1000 genomes]
rs2445962	0.82[AFR][1000 genomes]
rs2445964	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2445973	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2445974	0.92[ASN][1000 genomes]
rs2445976	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2494776	0.96[ASN][1000 genomes]
rs2502543	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2502564	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2502597	0.86[CEU][hapmap];0.84[AFR][1000 genomes]
rs3778241	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3799112	0.89[AFR][1000 genomes]
rs3799113	0.86[AFR][1000 genomes]
rs3806960	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[ASN][1000 genomes]
rs6455337	0.81[AFR][1000 genomes]
rs6455340	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6455342	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6455344	0.87[EUR][1000 genomes]
rs6905645	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935590	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7742015	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7747908	0.89[ASN][1000 genomes]
rs7749509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758405	0.86[AFR][1000 genomes]
rs7771508	0.82[AFR][1000 genomes]
rs7774371	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9185	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921973	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9294848	0.81[AFR][1000 genomes]
rs930886	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9342766	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342768	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346340	0.86[AFR][1000 genomes]
rs9346341	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9346342	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9354876	0.81[AFR][1000 genomes]
rs9354884	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364046	0.81[AFR][1000 genomes]
rs9364050	0.84[AFR][1000 genomes]
rs960144	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
2	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
3	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
4	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
5	chr6:70379000-70428400	Weak transcription	Ovary	ovary
6	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
7	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:70380800-70467800	Weak transcription	K562	blood
11	chr6:70382200-70435400	Weak transcription	Brain Angular Gyrus	brain
12	chr6:70382400-70430200	Weak transcription	Small Intestine	intestine
13	chr6:70383800-70431000	Weak transcription	Lung	lung
14	chr6:70384200-70428400	Weak transcription	Aorta	Aorta
15	chr6:70384200-70431000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:70384600-70417400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:70385000-70421600	Weak transcription	Fetal Intestine Large	intestine
18	chr6:70388000-70423400	Weak transcription	Left Ventricle	heart
19	chr6:70397800-70439000	Weak transcription	Fetal Heart	heart
20	chr6:70398000-70423000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:70400800-70430800	Weak transcription	Pancreas	Pancrea
22	chr6:70402000-70430800	Weak transcription	Esophagus	oesophagus
23	chr6:70402200-70435200	Weak transcription	Brain Anterior Caudate	brain
24	chr6:70402800-70430800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:70403000-70429800	Weak transcription	NHDF-Ad	bronchial
26	chr6:70403400-70432200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:70403800-70422800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:70404200-70447400	Weak transcription	Hela-S3	cervix
29	chr6:70404400-70420000	Weak transcription	NHLF	lung
30	chr6:70404600-70433800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:70405000-70432200	Weak transcription	Fetal Brain Female	brain
32	chr6:70405000-70468400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:70405400-70434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:70405600-70427600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:70405600-70446400	Weak transcription	HepG2	liver
36	chr6:70406000-70430800	Weak transcription	Thymus	Thymus
37	chr6:70406000-70433600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:70406200-70438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:70406600-70431200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:70406600-70449400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:70406600-70457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:70408000-70422800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:70408000-70430200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:70408200-70416800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:70408200-70422600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:70408200-70427200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:70408400-70425600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:70408400-70427600	Weak transcription	HMEC	breast
49	chr6:70408400-70428200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:70408400-70431200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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