Variant report

Variant	rs1032254
Chromosome Location	chr4:84787488-84787489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84774361..84778567-chr4:84785473..84788840,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1032249	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032252	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032253	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1354655	0.83[ASN][1000 genomes]
rs1488648	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007540	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007542	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17007545	0.85[AFR][1000 genomes]
rs17007550	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17007600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906577	0.91[ASN][1000 genomes]
rs1906579	0.83[ASN][1000 genomes]
rs1994511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017394	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373154	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55856140	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535501	0.91[ASN][1000 genomes]
rs6828229	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850957	0.91[ASN][1000 genomes]
rs6850984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721461	0.91[ASN][1000 genomes]
rs721462	0.91[ASN][1000 genomes]
rs72659236	0.83[EUR][1000 genomes]
rs72937261	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7696864	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84778400-84787800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:84778600-84787800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:84779800-84787800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:84779800-84787800	Weak transcription	NH-A	brain
5	chr4:84784000-84789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:84784200-84787800	Weak transcription	Placenta	Placenta
7	chr4:84785400-84788200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:84786000-84788000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:84786400-84788000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr4:84786400-84788200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:84786400-84788200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:84786600-84788200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:84786600-84789200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:84786800-84788200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:84787200-84787800	Weak transcription	Fetal Kidney	kidney
16	chr4:84787200-84788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:84787400-84788000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr4:84787400-84788000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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