Variant report

Variant	rs72937261
Chromosome Location	chr4:84792011-84792012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1032249	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1032250	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1032252	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032253	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032254	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1354655	0.84[ASN][1000 genomes]
rs1488648	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17007540	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007542	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17007545	0.83[AFR][1000 genomes]
rs17007550	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17007600	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1906577	0.93[ASN][1000 genomes]
rs1906579	0.84[ASN][1000 genomes]
rs1994511	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2017394	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373154	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55856140	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535501	0.93[ASN][1000 genomes]
rs6828229	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845816	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6850957	0.90[ASN][1000 genomes]
rs6850984	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs721461	0.93[ASN][1000 genomes]
rs721462	0.93[ASN][1000 genomes]
rs72659236	0.83[EUR][1000 genomes]
rs7696864	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84791000-84792400	Enhancers	Brain Hippocampus Middle	brain
2	chr4:84791600-84792400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:84791600-84792400	Enhancers	Brain Angular Gyrus	brain
4	chr4:84791600-84792600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:84791600-84793000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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