Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1032249	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1032250	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1032252	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1032253	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1032254	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1488648	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17007540	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17007542	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17007600	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1906577	0.82[ASN][1000 genomes]
rs1994511	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2017394	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4373154	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55856140	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6535501	0.82[ASN][1000 genomes]
rs6828229	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6845816	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6850957	0.82[ASN][1000 genomes]
rs6850984	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs721461	0.82[ASN][1000 genomes]
rs721462	0.82[ASN][1000 genomes]
rs72659236	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72937261	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7696864	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879513	chr4:84612373-84905452	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84776600-84785800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:84777000-84786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:84778200-84783600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:84778400-84787800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:84778600-84787800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:84779400-84786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:84779800-84786600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:84779800-84787800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:84779800-84787800	Weak transcription	NH-A	brain
10	chr4:84780000-84786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:84781400-84786800	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search: