Variant report
| Variant | rs1033599 |
|---|---|
| Chromosome Location | chr14:26019522-26019523 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1033600 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12434204 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12882376 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12894028 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1950445 | 0.84[EUR][1000 genomes] |
| rs1950446 | 0.84[EUR][1000 genomes] |
| rs1950447 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1950448 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1950450 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1951072 | 0.85[ASN][1000 genomes] |
| rs1955878 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1955880 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1955882 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1955889 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4981599 | 0.84[EUR][1000 genomes] |
| rs4983113 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7145678 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7152181 | 0.85[EUR][1000 genomes] |
| rs8018144 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs995973 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832750 | chr14:25856828-26022092 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv901519 | chr14:25949277-26043929 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv430993 | chr14:25976760-26097160 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:26019000-26020200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
