Variant report

Variant	rs1955878
Chromosome Location	chr14:26032329-26032330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1033599	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1033600	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12882376	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12894028	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950445	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1950446	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1950447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950450	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1951072	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1955880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1955882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1955889	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2207566	0.90[EUR][1000 genomes]
rs28676371	0.90[EUR][1000 genomes]
rs4981599	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4983113	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7145678	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7152181	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8011455	0.87[AFR][1000 genomes]
rs8013460	0.86[AFR][1000 genomes]
rs8018144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs926911	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs995973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901519	chr14:25949277-26043929	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv564073	chr14:26030013-26057695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26031600-26032400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links