Variant report

Variant	rs28676371
Chromosome Location	chr14:26059703-26059704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12434204	0.90[EUR][1000 genomes]
rs12882376	0.92[EUR][1000 genomes]
rs12894028	0.89[EUR][1000 genomes]
rs1950445	0.88[EUR][1000 genomes]
rs1950446	0.88[EUR][1000 genomes]
rs1950447	0.90[EUR][1000 genomes]
rs1950448	0.90[EUR][1000 genomes]
rs1950450	0.90[EUR][1000 genomes]
rs1951072	0.92[EUR][1000 genomes]
rs1955878	0.90[EUR][1000 genomes]
rs1955880	0.90[EUR][1000 genomes]
rs1955882	0.90[EUR][1000 genomes]
rs2207566	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981599	0.88[EUR][1000 genomes]
rs7152181	0.87[EUR][1000 genomes]
rs8018144	0.90[EUR][1000 genomes]
rs926911	0.93[EUR][1000 genomes]
rs995973	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv427937	chr14:26038386-26405118	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26055600-26061400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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