Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12434204	0.90[EUR][1000 genomes]
rs12882376	0.92[EUR][1000 genomes]
rs12894028	0.88[EUR][1000 genomes]
rs1950445	0.88[EUR][1000 genomes]
rs1950446	0.88[EUR][1000 genomes]
rs1950447	0.90[EUR][1000 genomes]
rs1950448	0.90[EUR][1000 genomes]
rs1950450	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1951072	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1955878	0.90[EUR][1000 genomes]
rs1955880	0.90[EUR][1000 genomes]
rs1955882	0.90[EUR][1000 genomes]
rs1956772	0.83[AFR][1000 genomes]
rs28676371	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981599	0.88[EUR][1000 genomes]
rs7141626	0.84[AFR][1000 genomes]
rs7152181	0.87[EUR][1000 genomes]
rs7160934	0.82[AFR][1000 genomes]
rs8018144	0.89[EUR][1000 genomes]
rs926911	0.92[EUR][1000 genomes]
rs995973	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44723000-44729800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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