Variant report

Variant	rs1955889
Chromosome Location	chr14:26015930-26015931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1033599	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1033600	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12434204	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12894028	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1950445	0.81[EUR][1000 genomes]
rs1950446	0.81[EUR][1000 genomes]
rs1950447	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1950448	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1950450	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1955878	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1955880	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1955882	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981599	0.81[EUR][1000 genomes]
rs4983113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145678	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152181	0.81[EUR][1000 genomes]
rs8018144	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs995973	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832750	chr14:25856828-26022092	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv901519	chr14:25949277-26043929	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1955889	C14orf21	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26012400-26016800	Weak transcription	Fetal Kidney	kidney
2	chr14:26015800-26016400	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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