Variant report

Variant	rs1033811
Chromosome Location	chr14:25129943-25129944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61976761	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61976765	1.00[AFR][1000 genomes]
rs61976780	1.00[AFR][1000 genomes]
rs61976813	1.00[AFR][1000 genomes]
rs61976833	1.00[AFR][1000 genomes]
rs61978981	1.00[AFR][1000 genomes]
rs985931	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25128800-25131800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:25128800-25132000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:25129000-25130000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:25129000-25130200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:25129000-25131000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:25129000-25134800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:25129000-25135200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:25129000-25135400	Enhancers	Primary hematopoietic stem cells	blood
9	chr14:25129200-25130000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:25129200-25130000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr14:25129200-25131200	Enhancers	GM12878-XiMat	blood
12	chr14:25129200-25131200	Enhancers	HMEC	breast
13	chr14:25129200-25131200	Enhancers	NHEK	skin
14	chr14:25129400-25130600	Weak transcription	Fetal Thymus	thymus
15	chr14:25129600-25131600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:25129800-25130200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:25129800-25131400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:25129800-25133600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:25129800-25134400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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