Variant report

Variant	rs61976765
Chromosome Location	chr14:25143016-25143017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1033811	1.00[AFR][1000 genomes]
rs61976761	1.00[AFR][1000 genomes]
rs61976780	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61976813	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61976833	1.00[AFR][1000 genomes]
rs61978981	1.00[AFR][1000 genomes]
rs985931	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25141800-25144200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:25142000-25144200	Flanking Active TSS	GM12878-XiMat	blood
3	chr14:25142200-25143600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr14:25142200-25143800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:25142200-25143800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr14:25142200-25144000	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr14:25142200-25144000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:25142200-25144000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr14:25142200-25144000	Flanking Active TSS	Dnd41	blood
10	chr14:25142200-25144200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:25142200-25144200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:25142200-25144200	Enhancers	HMEC	breast
13	chr14:25142200-25144200	Enhancers	NHEK	skin
14	chr14:25142400-25143200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr14:25142400-25143400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:25142400-25143600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr14:25142400-25143600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr14:25142400-25143600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr14:25142400-25143800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr14:25142400-25143800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:25142400-25144000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr14:25142400-25144000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr14:25142400-25144200	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr14:25142600-25143200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr14:25142600-25143800	Flanking Active TSS	Thymus	Thymus
26	chr14:25142600-25144000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:25142600-25144000	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr14:25142800-25144000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr14:25142800-25144000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:25142800-25144000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:25142800-25144000	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr14:25142800-25144200	Enhancers	Spleen	Spleen
33	chr14:25143000-25143200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:25143000-25143200	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr14:25143000-25143200	Flanking Active TSS	Fetal Thymus	thymus
36	chr14:25143000-25143600	Active TSS	Rectal Smooth Muscle	rectum
37	chr14:25143000-25143800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:25143000-25144000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr14:25143000-25144200	Enhancers	Adipose Nuclei	Adipose
40	chr14:25143000-25145000	Enhancers	Primary B cells from peripheral blood	blood

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