Variant report

Variant	rs61976780
Chromosome Location	chr14:25147078-25147079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25145702..25148414-chr14:25151278..25153378,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1033811	1.00[AFR][1000 genomes]
rs61976761	1.00[AFR][1000 genomes]
rs61976765	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61976813	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61976833	1.00[AFR][1000 genomes]
rs61978981	1.00[AFR][1000 genomes]
rs985931	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25144000-25147800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:25144000-25148000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:25144200-25147200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:25144200-25147400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:25144200-25147400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:25144200-25147400	Weak transcription	Fetal Thymus	thymus
7	chr14:25144200-25147800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:25144200-25147800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:25144200-25147800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:25144200-25147800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:25144200-25148000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:25144200-25148000	Weak transcription	Thymus	Thymus
13	chr14:25144400-25147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:25144400-25148000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr14:25144400-25148000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:25144600-25147600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:25144600-25147600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:25144600-25147800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:25144800-25147200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr14:25144800-25147200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:25144800-25147400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:25144800-25147400	Weak transcription	GM12878-XiMat	blood
23	chr14:25144800-25147800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:25144800-25148000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:25145000-25147200	Weak transcription	Primary B cells from cord blood	blood
26	chr14:25145000-25147400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr14:25145000-25147400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:25146600-25148200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:25146600-25148200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:25146800-25147200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:25146800-25147400	Enhancers	NHEK	skin
32	chr14:25146800-25148200	Enhancers	HMEC	breast
33	chr14:25146800-25149600	Enhancers	Primary T cells from cord blood	blood
34	chr14:25147000-25148000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr14:25147000-25150200	Enhancers	Primary hematopoietic stem cells	blood

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