Variant report

Variant	rs1034826
Chromosome Location	chr7:108083604-108083605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225561	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[TSI][hapmap]
rs10276271	0.80[CHD][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap]
rs10953574	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1158036	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859773	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs2190406	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284291	0.83[CHD][hapmap]
rs3763461	0.82[CHD][hapmap]
rs40848	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs6466235	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs995310	0.82[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1034826	THAP5	Cis_1M	lymphoblastoid	RTeQTL
rs1034826	NRCAM	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108067800-108089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108068000-108089400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:108069000-108086000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:108075200-108085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:108075800-108089400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:108076200-108094800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:108080800-108084200	Enhancers	A549	lung
8	chr7:108081600-108086200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:108081600-108089800	Weak transcription	Brain Anterior Caudate	brain
10	chr7:108081800-108084000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:108081800-108088400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:108082400-108083800	Enhancers	Fetal Muscle Leg	muscle
13	chr7:108082800-108083800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:108082800-108089400	Weak transcription	Brain Angular Gyrus	brain
15	chr7:108083200-108084200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:108083400-108084600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:108083400-108088000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:108083400-108089400	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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