Variant report

Variant	rs1158036
Chromosome Location	chr7:108092310-108092311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:107820337..107823179-chr7:108090688..108093464,2	MCF-7	breast:
2	chr7:107966054..107968625-chr7:108090941..108092937,2	MCF-7	breast:
3	chr7:108091245..108093315-chr7:108108890..108111235,2	MCF-7	breast:
4	chr7:108074243..108076743-chr7:108091855..108094696,3	MCF-7	breast:
5	chr7:107831583..107833126-chr7:108092027..108094730,2	MCF-7	breast:
6	chr7:108087694..108090999-chr7:108091222..108094694,3	K562	blood:
7	chr7:108087694..108090660-chr7:108091222..108093377,2	K562	blood:
8	chr7:107988750..107990727-chr7:108091201..108092929,2	MCF-7	breast:

No data

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10225561	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1034826	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953574	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1859767	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859773	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2190406	0.89[ASN][1000 genomes]
rs40848	0.86[EUR][1000 genomes]
rs6466235	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1158036	THAP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108076200-108094800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:108089400-108093800	Enhancers	HUVEC	blood vessel
3	chr7:108089800-108093200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:108090000-108094600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:108090000-108095000	Weak transcription	Pancreas	Pancrea
6	chr7:108090200-108093800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:108090200-108093800	Weak transcription	Fetal Brain Female	brain
8	chr7:108090200-108094200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:108090200-108094400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:108090200-108094600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:108090200-108094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:108090400-108093200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:108090400-108093800	Weak transcription	Fetal Brain Male	brain
14	chr7:108090400-108094400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:108090600-108093000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:108090600-108093000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:108090800-108093000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr7:108090800-108093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:108090800-108093200	Weak transcription	Brain Angular Gyrus	brain
20	chr7:108091000-108093000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:108091000-108093400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:108091000-108094600	Weak transcription	Brain Germinal Matrix	brain
23	chr7:108091200-108093000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:108092200-108093000	Enhancers	A549	lung
25	chr7:108092200-108094600	Weak transcription	HSMMtube	muscle

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