Variant report

Variant	rs1859767
Chromosome Location	chr7:108088323-108088324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108087694..108090999-chr7:108091222..108094694,3	K562	blood:
2	chr7:108084971..108087877-chr7:108088105..108090258,2	K562	blood:
3	chr7:108087694..108090660-chr7:108091222..108093377,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10225561	0.89[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1034826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10953574	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1158036	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859773	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2190406	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs40848	0.89[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs6466235	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs995310	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1859767	THAP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108067800-108089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:108068000-108089400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:108075800-108089400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:108076200-108094800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:108081600-108089800	Weak transcription	Brain Anterior Caudate	brain
6	chr7:108081800-108088400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:108082800-108089400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:108083400-108089400	Weak transcription	HUVEC	blood vessel
9	chr7:108084000-108089400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:108086800-108088400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:108087000-108089200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:108087000-108089200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:108087800-108088800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:108087800-108090000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:108088000-108089000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:108088000-108089000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:108088000-108089000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:108088200-108088600	Enhancers	Fetal Brain Female	brain
19	chr7:108088200-108089400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:108088200-108091800	Enhancers	A549	lung

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