Variant report

Variant	rs1036399
Chromosome Location	chr2:142601693-142601694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10185119	1.00[JPT][hapmap]
rs12691622	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1369536	0.80[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs1541976	0.81[CHB][hapmap]
rs2068854	0.93[JPT][hapmap]
rs2437293	0.93[JPT][hapmap]
rs352979	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs352980	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs352981	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs352983	0.91[CEU][hapmap];0.93[JPT][hapmap]
rs352985	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs352987	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6429925	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6429926	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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