Variant report

Variant	rs6429926
Chromosome Location	chr2:142617861-142617862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10185119	1.00[JPT][hapmap]
rs1036399	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12691622	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1369536	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2068854	0.93[JPT][hapmap]
rs2437293	0.93[JPT][hapmap]
rs352979	1.00[JPT][hapmap]
rs352980	1.00[JPT][hapmap]
rs352981	1.00[JPT][hapmap]
rs352983	0.95[CEU][hapmap];0.93[JPT][hapmap]
rs352985	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs352987	1.00[JPT][hapmap]
rs6429925	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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